Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23064 | 3' | -52.5 | NC_005178.1 | + | 321 | 0.69 | 0.573676 |
Target: 5'- gCUUCGACCcaggcugucagguccGGCGCUGuGCCGGuaGCGa -3' miRNA: 3'- aGAAGCUGG---------------UCGUGAC-UGGCUucUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 2575 | 0.7 | 0.524444 |
Target: 5'- --cUCGGCCAGCGC-GGCCaaguAGGACGc -3' miRNA: 3'- agaAGCUGGUCGUGaCUGGc---UUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 4191 | 1.11 | 0.001001 |
Target: 5'- cUCUUCGACCAGCACUGACCGAAGACGg -3' miRNA: 3'- -AGAAGCUGGUCGUGACUGGCUUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 6902 | 0.68 | 0.637666 |
Target: 5'- gUCUUCGuCCAGCuGCUcgccGCUGAGGugGc -3' miRNA: 3'- -AGAAGCuGGUCG-UGAc---UGGCUUCugC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 9654 | 0.66 | 0.76081 |
Target: 5'- aUCUgcgCGGCCGGUggcuucgccgaGCcGGCCG-AGGCGg -3' miRNA: 3'- -AGAa--GCUGGUCG-----------UGaCUGGCuUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 10354 | 0.67 | 0.728221 |
Target: 5'- ---cCGGgCuGCGCUGGCCGAgcuGGugGg -3' miRNA: 3'- agaaGCUgGuCGUGACUGGCU---UCugC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 10707 | 0.69 | 0.580484 |
Target: 5'- cUCgUUGaACCAGCccaACgGGCCGAAGACa -3' miRNA: 3'- -AGaAGC-UGGUCG---UGaCUGGCUUCUGc -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 10963 | 0.68 | 0.637666 |
Target: 5'- ---gCGGCCccAGCgaaucccuuGCUGAUCGAGGGCGg -3' miRNA: 3'- agaaGCUGG--UCG---------UGACUGGCUUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 12100 | 0.67 | 0.717133 |
Target: 5'- gUCgcgUGGCgGGC-CUGGCCGAuGGGCGc -3' miRNA: 3'- -AGaa-GCUGgUCGuGACUGGCU-UCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 12655 | 0.66 | 0.76081 |
Target: 5'- cUCggCGGCCGGCgcGCUGGCgGguGGCc -3' miRNA: 3'- -AGaaGCUGGUCG--UGACUGgCuuCUGc -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 12902 | 0.66 | 0.771404 |
Target: 5'- --aUCGGCgCAGuUGCUGGCCGGuGGugGg -3' miRNA: 3'- agaAGCUG-GUC-GUGACUGGCU-UCugC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 13040 | 0.73 | 0.390792 |
Target: 5'- ---cUGGCCAGC-CUGGCCGAugccuacaacaAGACGg -3' miRNA: 3'- agaaGCUGGUCGuGACUGGCU-----------UCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 15653 | 0.66 | 0.771404 |
Target: 5'- aUCUUCGccacgucuuCCAGCGCcgGGCCGAccaGGAg- -3' miRNA: 3'- -AGAAGCu--------GGUCGUGa-CUGGCU---UCUgc -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 16542 | 0.66 | 0.79211 |
Target: 5'- gUCUUCGACCucaAGgACcgGGCCGAccuGGCc -3' miRNA: 3'- -AGAAGCUGG---UCgUGa-CUGGCUu--CUGc -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 17041 | 0.67 | 0.717133 |
Target: 5'- aCUUCG-CCGGguCgggGuuACCGggGGCGg -3' miRNA: 3'- aGAAGCuGGUCguGa--C--UGGCuuCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 17654 | 0.67 | 0.694695 |
Target: 5'- ----aGACCGGCcaGgUGACCGucGAGACGg -3' miRNA: 3'- agaagCUGGUCG--UgACUGGC--UUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 17877 | 0.66 | 0.76081 |
Target: 5'- aUCUUCuGGCCaAGCcCUGGCaCGcGGAUGg -3' miRNA: 3'- -AGAAG-CUGG-UCGuGACUG-GCuUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 20945 | 0.7 | 0.556742 |
Target: 5'- --gUUGACCGGCACcugacgcccagcuUGACCaGGGGCGg -3' miRNA: 3'- agaAGCUGGUCGUG-------------ACUGGcUUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 21892 | 0.66 | 0.79211 |
Target: 5'- --gUCGGcCCGGCGCUGGaagacguggCGAAGAUGc -3' miRNA: 3'- agaAGCU-GGUCGUGACUg--------GCUUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 22199 | 0.66 | 0.76081 |
Target: 5'- --cUCcACCGGCACUGGCgcauaaGggGGCa -3' miRNA: 3'- agaAGcUGGUCGUGACUGg-----CuuCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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