Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23065 | 3' | -62.3 | NC_005178.1 | + | 18411 | 0.66 | 0.286027 |
Target: 5'- aGAGU---GCCGCCAGGCGCucCuGGa -3' miRNA: 3'- gCUCGuagCGGCGGUCCGCGccGuCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 11289 | 0.66 | 0.279053 |
Target: 5'- cCGAGCuguUCGaguCCGcCCAGGUGgUGGCcGGg -3' miRNA: 3'- -GCUCGu--AGC---GGC-GGUCCGC-GCCGuCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 22921 | 0.66 | 0.299655 |
Target: 5'- uGGGCcaCGaCCGCCGgaucgauGGuCGUGGCGGGu -3' miRNA: 3'- gCUCGuaGC-GGCGGU-------CC-GCGCCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 21197 | 0.66 | 0.279053 |
Target: 5'- aGAcCGUCGCCGCCAcGGa-CGGCAc- -3' miRNA: 3'- gCUcGUAGCGGCGGU-CCgcGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 23532 | 0.66 | 0.265513 |
Target: 5'- cCGAGCAgcgggccggcuUCG-CGCCGGGCGCccuGGCcgucgcccuGGGc -3' miRNA: 3'- -GCUCGU-----------AGCgGCGGUCCGCG---CCG---------UCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 7235 | 0.66 | 0.300386 |
Target: 5'- gCGGGUugCGUgGaCAGGCGCGGCAc- -3' miRNA: 3'- -GCUCGuaGCGgCgGUCCGCGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 31374 | 0.66 | 0.299655 |
Target: 5'- -cGGCG-CGgCGCCAGGCGCauagcccGGCGcuGGg -3' miRNA: 3'- gcUCGUaGCgGCGGUCCGCG-------CCGU--CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 32883 | 0.66 | 0.292421 |
Target: 5'- gCGAugGUCGCCaacgacuGCCgugcAGGUGCGGCAGu -3' miRNA: 3'- -GCUcgUAGCGG-------CGG----UCCGCGCCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 20446 | 0.67 | 0.233992 |
Target: 5'- uGGGCGUCcaggGCCGgcuUCAGG-GCGGuCAGGg -3' miRNA: 3'- gCUCGUAG----CGGC---GGUCCgCGCC-GUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 27164 | 0.67 | 0.240035 |
Target: 5'- uCGGGUua-GCCGCCuGGauCGCGGCAa- -3' miRNA: 3'- -GCUCGuagCGGCGGuCC--GCGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 22461 | 0.67 | 0.246207 |
Target: 5'- uGAGCugCGCCucaGUCAGG-GCGGaCAGGg -3' miRNA: 3'- gCUCGuaGCGG---CGGUCCgCGCC-GUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 12389 | 0.67 | 0.233992 |
Target: 5'- uCGAGC--UGCUGCaugacgccagCAGGaaaGCGGCAGGc -3' miRNA: 3'- -GCUCGuaGCGGCG----------GUCCg--CGCCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 7346 | 0.67 | 0.252509 |
Target: 5'- cCGGGCggCGUCGUUgaAGGUGC-GCAGGc -3' miRNA: 3'- -GCUCGuaGCGGCGG--UCCGCGcCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 5265 | 0.67 | 0.228078 |
Target: 5'- gGAGCAguuggccgagGCCGCCAccguucagggccGGCGCGaGCuGGa -3' miRNA: 3'- gCUCGUag--------CGGCGGU------------CCGCGC-CGuCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 29412 | 0.67 | 0.228078 |
Target: 5'- --cGCgAUC-CCGCCGGGCGCuGGCucGGu -3' miRNA: 3'- gcuCG-UAGcGGCGGUCCGCG-CCGu-CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 36105 | 0.67 | 0.228078 |
Target: 5'- gGAGUAcaUGCCGcCCAGGUuggGCuGGCGGGu -3' miRNA: 3'- gCUCGUa-GCGGC-GGUCCG---CG-CCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 10710 | 0.67 | 0.233992 |
Target: 5'- --cGCGUCGCacucacCGCCAGGaugGCGGCAu- -3' miRNA: 3'- gcuCGUAGCG------GCGGUCCg--CGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 12630 | 0.67 | 0.251238 |
Target: 5'- uCGAGCGUaaggccgUGCUguacggcucggcgGCCGGcGCGCuGGCGGGu -3' miRNA: 3'- -GCUCGUA-------GCGG-------------CGGUC-CGCG-CCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 21761 | 0.67 | 0.255068 |
Target: 5'- aGGGCaccgcuccgcuuuccAaCGCCaGCCAGGCGgCGGCgaAGGc -3' miRNA: 3'- gCUCG---------------UaGCGG-CGGUCCGC-GCCG--UCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 10431 | 0.67 | 0.258945 |
Target: 5'- aCGuGGC-UCGCUGCCacaAGGCGCuGGUAcGGu -3' miRNA: 3'- -GC-UCGuAGCGGCGG---UCCGCG-CCGU-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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