miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23065 3' -62.3 NC_005178.1 + 11289 0.66 0.279053
Target:  5'- cCGAGCuguUCGaguCCGcCCAGGUGgUGGCcGGg -3'
miRNA:   3'- -GCUCGu--AGC---GGC-GGUCCGC-GCCGuCC- -5'
23065 3' -62.3 NC_005178.1 + 5265 0.67 0.228078
Target:  5'- gGAGCAguuggccgagGCCGCCAccguucagggccGGCGCGaGCuGGa -3'
miRNA:   3'- gCUCGUag--------CGGCGGU------------CCGCGC-CGuCC- -5'
23065 3' -62.3 NC_005178.1 + 29412 0.67 0.228078
Target:  5'- --cGCgAUC-CCGCCGGGCGCuGGCucGGu -3'
miRNA:   3'- gcuCG-UAGcGGCGGUCCGCG-CCGu-CC- -5'
23065 3' -62.3 NC_005178.1 + 36105 0.67 0.228078
Target:  5'- gGAGUAcaUGCCGcCCAGGUuggGCuGGCGGGu -3'
miRNA:   3'- gCUCGUa-GCGGC-GGUCCG---CG-CCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 10710 0.67 0.233992
Target:  5'- --cGCGUCGCacucacCGCCAGGaugGCGGCAu- -3'
miRNA:   3'- gcuCGUAGCG------GCGGUCCg--CGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 12630 0.67 0.251238
Target:  5'- uCGAGCGUaaggccgUGCUguacggcucggcgGCCGGcGCGCuGGCGGGu -3'
miRNA:   3'- -GCUCGUA-------GCGG-------------CGGUC-CGCG-CCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 21761 0.67 0.255068
Target:  5'- aGGGCaccgcuccgcuuuccAaCGCCaGCCAGGCGgCGGCgaAGGc -3'
miRNA:   3'- gCUCG---------------UaGCGG-CGGUCCGC-GCCG--UCC- -5'
23065 3' -62.3 NC_005178.1 + 10431 0.67 0.258945
Target:  5'- aCGuGGC-UCGCUGCCacaAGGCGCuGGUAcGGu -3'
miRNA:   3'- -GC-UCGuAGCGGCGG---UCCGCG-CCGU-CC- -5'
23065 3' -62.3 NC_005178.1 + 26185 0.67 0.258945
Target:  5'- -cGGCgGUgGCCGCUgcGGGCGUGGCGcuGGc -3'
miRNA:   3'- gcUCG-UAgCGGCGG--UCCGCGCCGU--CC- -5'
23065 3' -62.3 NC_005178.1 + 14663 0.68 0.222291
Target:  5'- gGAGCG-CGCCGCCGccauggaggacGGCGCgaucaucugcuGGCcGGa -3'
miRNA:   3'- gCUCGUaGCGGCGGU-----------CCGCG-----------CCGuCC- -5'
23065 3' -62.3 NC_005178.1 + 11878 0.68 0.222291
Target:  5'- cCGAGCAgaUCGC--CCAGGCcguGCGGgAGGu -3'
miRNA:   3'- -GCUCGU--AGCGgcGGUCCG---CGCCgUCC- -5'
23065 3' -62.3 NC_005178.1 + 12932 0.68 0.21663
Target:  5'- gGAGgaCGUgGCgCGCCAGGUGCuGGCcGGc -3'
miRNA:   3'- gCUC--GUAgCG-GCGGUCCGCG-CCGuCC- -5'
23065 3' -62.3 NC_005178.1 + 27293 0.7 0.145618
Target:  5'- cCGAGCAgaaGCU-CCAGGCGCaGCAGc -3'
miRNA:   3'- -GCUCGUag-CGGcGGUCCGCGcCGUCc -5'
23065 3' -62.3 NC_005178.1 + 5732 0.7 0.157873
Target:  5'- gGAGCAgaUCGCCGCaucGGUGgCGGCcucGGGc -3'
miRNA:   3'- gCUCGU--AGCGGCGgu-CCGC-GCCG---UCC- -5'
23065 3' -62.3 NC_005178.1 + 32891 0.69 0.162161
Target:  5'- aGAGCAUCaGCgGCUGGGUgaucuccaGCGGCGuGGu -3'
miRNA:   3'- gCUCGUAG-CGgCGGUCCG--------CGCCGU-CC- -5'
23065 3' -62.3 NC_005178.1 + 10313 0.69 0.180376
Target:  5'- -uGGCGgauaGCCgaggGCCGGGCGCGGaGGGg -3'
miRNA:   3'- gcUCGUag--CGG----CGGUCCGCGCCgUCC- -5'
23065 3' -62.3 NC_005178.1 + 22259 0.69 0.185206
Target:  5'- -aAGC--CGaCCGCCAGGCuggcccgccagGCGGCGGGc -3'
miRNA:   3'- gcUCGuaGC-GGCGGUCCG-----------CGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 25607 0.68 0.200382
Target:  5'- cCGAGCAacgaGCgGCCgAGGCuGCGGCGa- -3'
miRNA:   3'- -GCUCGUag--CGgCGG-UCCG-CGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 25857 0.68 0.205677
Target:  5'- -cGGCAuuUCGgcaggucaguaCCGCCAGGCcauGCGGCAGu -3'
miRNA:   3'- gcUCGU--AGC-----------GGCGGUCCG---CGCCGUCc -5'
23065 3' -62.3 NC_005178.1 + 9521 0.68 0.21663
Target:  5'- aGAccGCcagCGCCGCCuGGCGCGGgAa- -3'
miRNA:   3'- gCU--CGua-GCGGCGGuCCGCGCCgUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.