miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23065 3' -62.3 NC_005178.1 + 9521 0.68 0.21663
Target:  5'- aGAccGCcagCGCCGCCuGGCGCGGgAa- -3'
miRNA:   3'- gCU--CGua-GCGGCGGuCCGCGCCgUcc -5'
23065 3' -62.3 NC_005178.1 + 12932 0.68 0.21663
Target:  5'- gGAGgaCGUgGCgCGCCAGGUGCuGGCcGGc -3'
miRNA:   3'- gCUC--GUAgCG-GCGGUCCGCG-CCGuCC- -5'
23065 3' -62.3 NC_005178.1 + 4569 0.69 0.188654
Target:  5'- gGAGCGUUGCCGCUcGGCcagcucgcaccacuGCcgguagcgcugGGCGGGa -3'
miRNA:   3'- gCUCGUAGCGGCGGuCCG--------------CG-----------CCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 26784 0.68 0.194696
Target:  5'- cCGAGCAuuUCGUC-CCAGGCGCccuuggccaccccGGCAacGGu -3'
miRNA:   3'- -GCUCGU--AGCGGcGGUCCGCG-------------CCGU--CC- -5'
23065 3' -62.3 NC_005178.1 + 2863 0.68 0.200382
Target:  5'- gCGGGCAUCGgCGaCCAGuuGCuGGCGGu -3'
miRNA:   3'- -GCUCGUAGCgGC-GGUCcgCG-CCGUCc -5'
23065 3' -62.3 NC_005178.1 + 20581 0.68 0.200382
Target:  5'- aCGGGCGcccacuUCGCCGggucgggguuaCCGGGgGCGGCGa- -3'
miRNA:   3'- -GCUCGU------AGCGGC-----------GGUCCgCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 8872 0.68 0.200382
Target:  5'- cCGGGCGacuuucUUGCCGaCCuGGUGCGGCucagcGGu -3'
miRNA:   3'- -GCUCGU------AGCGGC-GGuCCGCGCCGu----CC- -5'
23065 3' -62.3 NC_005178.1 + 23967 0.68 0.211093
Target:  5'- cCGAGaa-CGCCGUugacgaUAGGCGCGGCGu- -3'
miRNA:   3'- -GCUCguaGCGGCG------GUCCGCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 20446 0.67 0.233992
Target:  5'- uGGGCGUCcaggGCCGgcuUCAGG-GCGGuCAGGg -3'
miRNA:   3'- gCUCGUAG----CGGC---GGUCCgCGCC-GUCC- -5'
23065 3' -62.3 NC_005178.1 + 12389 0.67 0.233992
Target:  5'- uCGAGC--UGCUGCaugacgccagCAGGaaaGCGGCAGGc -3'
miRNA:   3'- -GCUCGuaGCGGCG----------GUCCg--CGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 27164 0.67 0.240035
Target:  5'- uCGGGUua-GCCGCCuGGauCGCGGCAa- -3'
miRNA:   3'- -GCUCGuagCGGCGGuCC--GCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 22461 0.67 0.246207
Target:  5'- uGAGCugCGCCucaGUCAGG-GCGGaCAGGg -3'
miRNA:   3'- gCUCGuaGCGG---CGGUCCgCGCC-GUCC- -5'
23065 3' -62.3 NC_005178.1 + 7346 0.67 0.252509
Target:  5'- cCGGGCggCGUCGUUgaAGGUGC-GCAGGc -3'
miRNA:   3'- -GCUCGuaGCGGCGG--UCCGCGcCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 23532 0.66 0.265513
Target:  5'- cCGAGCAgcgggccggcuUCG-CGCCGGGCGCccuGGCcgucgcccuGGGc -3'
miRNA:   3'- -GCUCGU-----------AGCgGCGGUCCGCG---CCG---------UCC- -5'
23065 3' -62.3 NC_005178.1 + 18411 0.66 0.286027
Target:  5'- aGAGU---GCCGCCAGGCGCucCuGGa -3'
miRNA:   3'- gCUCGuagCGGCGGUCCGCGccGuCC- -5'
23065 3' -62.3 NC_005178.1 + 32883 0.66 0.292421
Target:  5'- gCGAugGUCGCCaacgacuGCCgugcAGGUGCGGCAGu -3'
miRNA:   3'- -GCUcgUAGCGG-------CGG----UCCGCGCCGUCc -5'
23065 3' -62.3 NC_005178.1 + 31374 0.66 0.299655
Target:  5'- -cGGCG-CGgCGCCAGGCGCauagcccGGCGcuGGg -3'
miRNA:   3'- gcUCGUaGCgGCGGUCCGCG-------CCGU--CC- -5'
23065 3' -62.3 NC_005178.1 + 22921 0.66 0.299655
Target:  5'- uGGGCcaCGaCCGCCGgaucgauGGuCGUGGCGGGu -3'
miRNA:   3'- gCUCGuaGC-GGCGGU-------CC-GCGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 7235 0.66 0.300386
Target:  5'- gCGGGUugCGUgGaCAGGCGCGGCAc- -3'
miRNA:   3'- -GCUCGuaGCGgCgGUCCGCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 37248 0.7 0.149201
Target:  5'- -uGGCGUCaaacucgGCCuCCAGGCGCaGCGGGu -3'
miRNA:   3'- gcUCGUAG-------CGGcGGUCCGCGcCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.