Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23065 | 3' | -62.3 | NC_005178.1 | + | 27164 | 0.67 | 0.240035 |
Target: 5'- uCGGGUua-GCCGCCuGGauCGCGGCAa- -3' miRNA: 3'- -GCUCGuagCGGCGGuCC--GCGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 22461 | 0.67 | 0.246207 |
Target: 5'- uGAGCugCGCCucaGUCAGG-GCGGaCAGGg -3' miRNA: 3'- gCUCGuaGCGG---CGGUCCgCGCC-GUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 7346 | 0.67 | 0.252509 |
Target: 5'- cCGGGCggCGUCGUUgaAGGUGC-GCAGGc -3' miRNA: 3'- -GCUCGuaGCGGCGG--UCCGCGcCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 23532 | 0.66 | 0.265513 |
Target: 5'- cCGAGCAgcgggccggcuUCG-CGCCGGGCGCccuGGCcgucgcccuGGGc -3' miRNA: 3'- -GCUCGU-----------AGCgGCGGUCCGCG---CCG---------UCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 18411 | 0.66 | 0.286027 |
Target: 5'- aGAGU---GCCGCCAGGCGCucCuGGa -3' miRNA: 3'- gCUCGuagCGGCGGUCCGCGccGuCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 32883 | 0.66 | 0.292421 |
Target: 5'- gCGAugGUCGCCaacgacuGCCgugcAGGUGCGGCAGu -3' miRNA: 3'- -GCUcgUAGCGG-------CGG----UCCGCGCCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 31374 | 0.66 | 0.299655 |
Target: 5'- -cGGCG-CGgCGCCAGGCGCauagcccGGCGcuGGg -3' miRNA: 3'- gcUCGUaGCgGCGGUCCGCG-------CCGU--CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 22921 | 0.66 | 0.299655 |
Target: 5'- uGGGCcaCGaCCGCCGgaucgauGGuCGUGGCGGGu -3' miRNA: 3'- gCUCGuaGC-GGCGGU-------CC-GCGCCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 7235 | 0.66 | 0.300386 |
Target: 5'- gCGGGUugCGUgGaCAGGCGCGGCAc- -3' miRNA: 3'- -GCUCGuaGCGgCgGUCCGCGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 26369 | 0.71 | 0.127111 |
Target: 5'- gCGAGUGaCGCCGCCAuGGCGgacaguugccCGGCGGu -3' miRNA: 3'- -GCUCGUaGCGGCGGU-CCGC----------GCCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 6850 | 0.71 | 0.117077 |
Target: 5'- aGGGCAUCaCCGaCCAGGaucaGCaGCAGGc -3' miRNA: 3'- gCUCGUAGcGGC-GGUCCg---CGcCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 16160 | 0.73 | 0.088729 |
Target: 5'- uCGAGCAUUuCCGCCAGGU-CGGCcguGGa -3' miRNA: 3'- -GCUCGUAGcGGCGGUCCGcGCCGu--CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 28666 | 0.73 | 0.081582 |
Target: 5'- uGAGCggCGCCcauGCuUGGGCGUGGUAGGg -3' miRNA: 3'- gCUCGuaGCGG---CG-GUCCGCGCCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 5606 | 0.75 | 0.065116 |
Target: 5'- uCGA-CGUaGCCGcCCAGGCGCaGGCAGGc -3' miRNA: 3'- -GCUcGUAgCGGC-GGUCCGCG-CCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 33963 | 1.1 | 0.000111 |
Target: 5'- cCGAGCAUCGCCGCCAGGCGCGGCAGGa -3' miRNA: 3'- -GCUCGUAGCGGCGGUCCGCGCCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 11878 | 0.68 | 0.222291 |
Target: 5'- cCGAGCAgaUCGC--CCAGGCcguGCGGgAGGu -3' miRNA: 3'- -GCUCGU--AGCGgcGGUCCG---CGCCgUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 27293 | 0.7 | 0.145618 |
Target: 5'- cCGAGCAgaaGCU-CCAGGCGCaGCAGc -3' miRNA: 3'- -GCUCGUag-CGGcGGUCCGCGcCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 12932 | 0.68 | 0.21663 |
Target: 5'- gGAGgaCGUgGCgCGCCAGGUGCuGGCcGGc -3' miRNA: 3'- gCUC--GUAgCG-GCGGUCCGCG-CCGuCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 9521 | 0.68 | 0.21663 |
Target: 5'- aGAccGCcagCGCCGCCuGGCGCGGgAa- -3' miRNA: 3'- gCU--CGua-GCGGCGGuCCGCGCCgUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 25857 | 0.68 | 0.205677 |
Target: 5'- -cGGCAuuUCGgcaggucaguaCCGCCAGGCcauGCGGCAGu -3' miRNA: 3'- gcUCGU--AGC-----------GGCGGUCCG---CGCCGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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