miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23065 3' -62.3 NC_005178.1 + 27164 0.67 0.240035
Target:  5'- uCGGGUua-GCCGCCuGGauCGCGGCAa- -3'
miRNA:   3'- -GCUCGuagCGGCGGuCC--GCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 22461 0.67 0.246207
Target:  5'- uGAGCugCGCCucaGUCAGG-GCGGaCAGGg -3'
miRNA:   3'- gCUCGuaGCGG---CGGUCCgCGCC-GUCC- -5'
23065 3' -62.3 NC_005178.1 + 7346 0.67 0.252509
Target:  5'- cCGGGCggCGUCGUUgaAGGUGC-GCAGGc -3'
miRNA:   3'- -GCUCGuaGCGGCGG--UCCGCGcCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 23532 0.66 0.265513
Target:  5'- cCGAGCAgcgggccggcuUCG-CGCCGGGCGCccuGGCcgucgcccuGGGc -3'
miRNA:   3'- -GCUCGU-----------AGCgGCGGUCCGCG---CCG---------UCC- -5'
23065 3' -62.3 NC_005178.1 + 18411 0.66 0.286027
Target:  5'- aGAGU---GCCGCCAGGCGCucCuGGa -3'
miRNA:   3'- gCUCGuagCGGCGGUCCGCGccGuCC- -5'
23065 3' -62.3 NC_005178.1 + 32883 0.66 0.292421
Target:  5'- gCGAugGUCGCCaacgacuGCCgugcAGGUGCGGCAGu -3'
miRNA:   3'- -GCUcgUAGCGG-------CGG----UCCGCGCCGUCc -5'
23065 3' -62.3 NC_005178.1 + 31374 0.66 0.299655
Target:  5'- -cGGCG-CGgCGCCAGGCGCauagcccGGCGcuGGg -3'
miRNA:   3'- gcUCGUaGCgGCGGUCCGCG-------CCGU--CC- -5'
23065 3' -62.3 NC_005178.1 + 22921 0.66 0.299655
Target:  5'- uGGGCcaCGaCCGCCGgaucgauGGuCGUGGCGGGu -3'
miRNA:   3'- gCUCGuaGC-GGCGGU-------CC-GCGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 7235 0.66 0.300386
Target:  5'- gCGGGUugCGUgGaCAGGCGCGGCAc- -3'
miRNA:   3'- -GCUCGuaGCGgCgGUCCGCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 26369 0.71 0.127111
Target:  5'- gCGAGUGaCGCCGCCAuGGCGgacaguugccCGGCGGu -3'
miRNA:   3'- -GCUCGUaGCGGCGGU-CCGC----------GCCGUCc -5'
23065 3' -62.3 NC_005178.1 + 6850 0.71 0.117077
Target:  5'- aGGGCAUCaCCGaCCAGGaucaGCaGCAGGc -3'
miRNA:   3'- gCUCGUAGcGGC-GGUCCg---CGcCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 16160 0.73 0.088729
Target:  5'- uCGAGCAUUuCCGCCAGGU-CGGCcguGGa -3'
miRNA:   3'- -GCUCGUAGcGGCGGUCCGcGCCGu--CC- -5'
23065 3' -62.3 NC_005178.1 + 28666 0.73 0.081582
Target:  5'- uGAGCggCGCCcauGCuUGGGCGUGGUAGGg -3'
miRNA:   3'- gCUCGuaGCGG---CG-GUCCGCGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 5606 0.75 0.065116
Target:  5'- uCGA-CGUaGCCGcCCAGGCGCaGGCAGGc -3'
miRNA:   3'- -GCUcGUAgCGGC-GGUCCGCG-CCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 33963 1.1 0.000111
Target:  5'- cCGAGCAUCGCCGCCAGGCGCGGCAGGa -3'
miRNA:   3'- -GCUCGUAGCGGCGGUCCGCGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 11878 0.68 0.222291
Target:  5'- cCGAGCAgaUCGC--CCAGGCcguGCGGgAGGu -3'
miRNA:   3'- -GCUCGU--AGCGgcGGUCCG---CGCCgUCC- -5'
23065 3' -62.3 NC_005178.1 + 27293 0.7 0.145618
Target:  5'- cCGAGCAgaaGCU-CCAGGCGCaGCAGc -3'
miRNA:   3'- -GCUCGUag-CGGcGGUCCGCGcCGUCc -5'
23065 3' -62.3 NC_005178.1 + 12932 0.68 0.21663
Target:  5'- gGAGgaCGUgGCgCGCCAGGUGCuGGCcGGc -3'
miRNA:   3'- gCUC--GUAgCG-GCGGUCCGCG-CCGuCC- -5'
23065 3' -62.3 NC_005178.1 + 9521 0.68 0.21663
Target:  5'- aGAccGCcagCGCCGCCuGGCGCGGgAa- -3'
miRNA:   3'- gCU--CGua-GCGGCGGuCCGCGCCgUcc -5'
23065 3' -62.3 NC_005178.1 + 25857 0.68 0.205677
Target:  5'- -cGGCAuuUCGgcaggucaguaCCGCCAGGCcauGCGGCAGu -3'
miRNA:   3'- gcUCGU--AGC-----------GGCGGUCCG---CGCCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.