miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23065 3' -62.3 NC_005178.1 + 12630 0.67 0.251238
Target:  5'- uCGAGCGUaaggccgUGCUguacggcucggcgGCCGGcGCGCuGGCGGGu -3'
miRNA:   3'- -GCUCGUA-------GCGG-------------CGGUC-CGCG-CCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 12932 0.68 0.21663
Target:  5'- gGAGgaCGUgGCgCGCCAGGUGCuGGCcGGc -3'
miRNA:   3'- gCUC--GUAgCG-GCGGUCCGCG-CCGuCC- -5'
23065 3' -62.3 NC_005178.1 + 14663 0.68 0.222291
Target:  5'- gGAGCG-CGCCGCCGccauggaggacGGCGCgaucaucugcuGGCcGGa -3'
miRNA:   3'- gCUCGUaGCGGCGGU-----------CCGCG-----------CCGuCC- -5'
23065 3' -62.3 NC_005178.1 + 16160 0.73 0.088729
Target:  5'- uCGAGCAUUuCCGCCAGGU-CGGCcguGGa -3'
miRNA:   3'- -GCUCGUAGcGGCGGUCCGcGCCGu--CC- -5'
23065 3' -62.3 NC_005178.1 + 17926 0.69 0.185206
Target:  5'- gGAGCAcguccuggaccUCGCCG--AGG-GCGGCAGGc -3'
miRNA:   3'- gCUCGU-----------AGCGGCggUCCgCGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 17973 0.69 0.162161
Target:  5'- gGAGCGguccacaaaCGCCuGCCAGGCGCG-CuGGc -3'
miRNA:   3'- gCUCGUa--------GCGG-CGGUCCGCGCcGuCC- -5'
23065 3' -62.3 NC_005178.1 + 18157 0.69 0.175659
Target:  5'- -uGGCGg-GCUggGCCAGGCGCugcGGCAGGu -3'
miRNA:   3'- gcUCGUagCGG--CGGUCCGCG---CCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 18411 0.66 0.286027
Target:  5'- aGAGU---GCCGCCAGGCGCucCuGGa -3'
miRNA:   3'- gCUCGuagCGGCGGUCCGCGccGuCC- -5'
23065 3' -62.3 NC_005178.1 + 20446 0.67 0.233992
Target:  5'- uGGGCGUCcaggGCCGgcuUCAGG-GCGGuCAGGg -3'
miRNA:   3'- gCUCGUAG----CGGC---GGUCCgCGCC-GUCC- -5'
23065 3' -62.3 NC_005178.1 + 20581 0.68 0.200382
Target:  5'- aCGGGCGcccacuUCGCCGggucgggguuaCCGGGgGCGGCGa- -3'
miRNA:   3'- -GCUCGU------AGCGGC-----------GGUCCgCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 21197 0.66 0.279053
Target:  5'- aGAcCGUCGCCGCCAcGGa-CGGCAc- -3'
miRNA:   3'- gCUcGUAGCGGCGGU-CCgcGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 21761 0.67 0.255068
Target:  5'- aGGGCaccgcuccgcuuuccAaCGCCaGCCAGGCGgCGGCgaAGGc -3'
miRNA:   3'- gCUCG---------------UaGCGG-CGGUCCGC-GCCG--UCC- -5'
23065 3' -62.3 NC_005178.1 + 22259 0.69 0.185206
Target:  5'- -aAGC--CGaCCGCCAGGCuggcccgccagGCGGCGGGc -3'
miRNA:   3'- gcUCGuaGC-GGCGGUCCG-----------CGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 22461 0.67 0.246207
Target:  5'- uGAGCugCGCCucaGUCAGG-GCGGaCAGGg -3'
miRNA:   3'- gCUCGuaGCGG---CGGUCCgCGCC-GUCC- -5'
23065 3' -62.3 NC_005178.1 + 22921 0.66 0.299655
Target:  5'- uGGGCcaCGaCCGCCGgaucgauGGuCGUGGCGGGu -3'
miRNA:   3'- gCUCGuaGC-GGCGGU-------CC-GCGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 23362 0.75 0.063298
Target:  5'- gGGGCGUCGCa-CCAGG-GCGGCAGu -3'
miRNA:   3'- gCUCGUAGCGgcGGUCCgCGCCGUCc -5'
23065 3' -62.3 NC_005178.1 + 23532 0.66 0.265513
Target:  5'- cCGAGCAgcgggccggcuUCG-CGCCGGGCGCccuGGCcgucgcccuGGGc -3'
miRNA:   3'- -GCUCGU-----------AGCgGCGGUCCGCG---CCG---------UCC- -5'
23065 3' -62.3 NC_005178.1 + 23967 0.68 0.211093
Target:  5'- cCGAGaa-CGCCGUugacgaUAGGCGCGGCGu- -3'
miRNA:   3'- -GCUCguaGCGGCG------GUCCGCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 25607 0.68 0.200382
Target:  5'- cCGAGCAacgaGCgGCCgAGGCuGCGGCGa- -3'
miRNA:   3'- -GCUCGUag--CGgCGG-UCCG-CGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 25857 0.68 0.205677
Target:  5'- -cGGCAuuUCGgcaggucaguaCCGCCAGGCcauGCGGCAGu -3'
miRNA:   3'- gcUCGU--AGC-----------GGCGGUCCG---CGCCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.