miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23079 3' -54.3 NC_005178.1 + 1692 0.69 0.478054
Target:  5'- ---gGUCGAuGUGCGugGCGGCCgcguggcuuacGGCCGCg -3'
miRNA:   3'- cuaaCGGCU-CAUGU--UGCUGG-----------CCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 2062 0.7 0.426246
Target:  5'- ---cGCCGGGUACGcgcuaccguugauGCGgaACUGGCCGg -3'
miRNA:   3'- cuaaCGGCUCAUGU-------------UGC--UGGCCGGCg -5'
23079 3' -54.3 NC_005178.1 + 2307 0.67 0.632604
Target:  5'- ---aGCCGcGcGCGAgggUGACCGuGCCGCu -3'
miRNA:   3'- cuaaCGGCuCaUGUU---GCUGGC-CGGCG- -5'
23079 3' -54.3 NC_005178.1 + 2408 0.67 0.580574
Target:  5'- ---aGCCGGcuggcguucgucaacGUgACGACguucgGACCGGCCGCc -3'
miRNA:   3'- cuaaCGGCU---------------CA-UGUUG-----CUGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 2855 0.68 0.531681
Target:  5'- ---cGCCGGGUcgaacggauGCGgaACGGCUGGCCa- -3'
miRNA:   3'- cuaaCGGCUCA---------UGU--UGCUGGCCGGcg -5'
23079 3' -54.3 NC_005178.1 + 3354 0.7 0.447184
Target:  5'- ---cGCCGAGguccaGCAcccgaugcACGGCCGGCCc- -3'
miRNA:   3'- cuaaCGGCUCa----UGU--------UGCUGGCCGGcg -5'
23079 3' -54.3 NC_005178.1 + 3833 1.13 0.000448
Target:  5'- aGAUUGCCGAGUACAACGACCGGCCGCa -3'
miRNA:   3'- -CUAACGGCUCAUGUUGCUGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 3956 0.66 0.689098
Target:  5'- ---aGCgCGAGcGCGuCG-CCGGUCGCg -3'
miRNA:   3'- cuaaCG-GCUCaUGUuGCuGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 3961 0.69 0.488577
Target:  5'- --aUGCgCGucaccgACGACGAggcCCGGCCGCu -3'
miRNA:   3'- cuaACG-GCuca---UGUUGCU---GGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 4514 0.75 0.227208
Target:  5'- ---gGCCGAGcgGCAACGcuCCGGCCuGCc -3'
miRNA:   3'- cuaaCGGCUCa-UGUUGCu-GGCCGG-CG- -5'
23079 3' -54.3 NC_005178.1 + 4893 0.68 0.564887
Target:  5'- ---cGCCGuAGUGCAugucguagACGACCaGGUCGa -3'
miRNA:   3'- cuaaCGGC-UCAUGU--------UGCUGG-CCGGCg -5'
23079 3' -54.3 NC_005178.1 + 4929 0.71 0.36889
Target:  5'- aGAUcGCCGAGgaacuggccgcCAGCGGCCGcCCGCu -3'
miRNA:   3'- -CUAaCGGCUCau---------GUUGCUGGCcGGCG- -5'
23079 3' -54.3 NC_005178.1 + 5630 0.69 0.488577
Target:  5'- --aUGCCGAuccagcgauGgcCGAUGACCGGCaGCg -3'
miRNA:   3'- cuaACGGCU---------CauGUUGCUGGCCGgCG- -5'
23079 3' -54.3 NC_005178.1 + 5757 0.66 0.689098
Target:  5'- ---cGuCCGGGUGCuGCuccagcACUGGCCGCc -3'
miRNA:   3'- cuaaC-GGCUCAUGuUGc-----UGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 6072 0.7 0.403997
Target:  5'- ---gGCCGuGUcgcacggaauguuCAGCGAgCCGGCCGCc -3'
miRNA:   3'- cuaaCGGCuCAu------------GUUGCU-GGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 6695 0.73 0.301293
Target:  5'- gGAcgGCUGGGUACGACGAauggaucaccucuaCCGGCUGa -3'
miRNA:   3'- -CUaaCGGCUCAUGUUGCU--------------GGCCGGCg -5'
23079 3' -54.3 NC_005178.1 + 7101 0.74 0.232795
Target:  5'- ---gGUCGAGUGCAgcgaguaccuccaGCGGCCGgcGCCGCu -3'
miRNA:   3'- cuaaCGGCUCAUGU-------------UGCUGGC--CGGCG- -5'
23079 3' -54.3 NC_005178.1 + 7314 0.69 0.45633
Target:  5'- ---aGCCaucaaauGGGUGCGACGACCaGuuGCu -3'
miRNA:   3'- cuaaCGG-------CUCAUGUUGCUGGcCggCG- -5'
23079 3' -54.3 NC_005178.1 + 7581 0.69 0.509938
Target:  5'- aGUUGCCGGGcUGCGcguuccACG-CCaGGCCGUu -3'
miRNA:   3'- cUAACGGCUC-AUGU------UGCuGG-CCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 7646 0.71 0.388959
Target:  5'- uGAUUGgaaCCGGcGUugAACGACCaguGGCCGUc -3'
miRNA:   3'- -CUAAC---GGCU-CAugUUGCUGG---CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.