miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23079 3' -54.3 NC_005178.1 + 10933 0.68 0.520766
Target:  5'- ---cGCCGAGU-CGAucCGGCgCGGcCCGCc -3'
miRNA:   3'- cuaaCGGCUCAuGUU--GCUG-GCC-GGCG- -5'
23079 3' -54.3 NC_005178.1 + 13021 0.7 0.437141
Target:  5'- ---cGCCGugaaGGUGCAGCuGCUGGCCaGCc -3'
miRNA:   3'- cuaaCGGC----UCAUGUUGcUGGCCGG-CG- -5'
23079 3' -54.3 NC_005178.1 + 3354 0.7 0.447184
Target:  5'- ---cGCCGAGguccaGCAcccgaugcACGGCCGGCCc- -3'
miRNA:   3'- cuaaCGGCUCa----UGU--------UGCUGGCCGGcg -5'
23079 3' -54.3 NC_005178.1 + 1692 0.69 0.478054
Target:  5'- ---gGUCGAuGUGCGugGCGGCCgcguggcuuacGGCCGCg -3'
miRNA:   3'- cuaaCGGCU-CAUGU--UGCUGG-----------CCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 3961 0.69 0.488577
Target:  5'- --aUGCgCGucaccgACGACGAggcCCGGCCGCu -3'
miRNA:   3'- cuaACG-GCuca---UGUUGCU---GGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 15722 0.69 0.499207
Target:  5'- ---cGCCGc--GCAACGcCuCGGCCGCa -3'
miRNA:   3'- cuaaCGGCucaUGUUGCuG-GCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 37195 0.69 0.499207
Target:  5'- ---gGCCGAGUuuGACGccaucgcuACCGGCacaGCg -3'
miRNA:   3'- cuaaCGGCUCAugUUGC--------UGGCCGg--CG- -5'
23079 3' -54.3 NC_005178.1 + 17577 0.69 0.506709
Target:  5'- --cUGCCG-GUGCcgaaucguuccguuGACGG-CGGCCGCu -3'
miRNA:   3'- cuaACGGCuCAUG--------------UUGCUgGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 8837 0.69 0.508861
Target:  5'- cGcgUGCCGGGUGugagcccCGACGccACCGaCCGCg -3'
miRNA:   3'- -CuaACGGCUCAU-------GUUGC--UGGCcGGCG- -5'
23079 3' -54.3 NC_005178.1 + 35108 0.71 0.370685
Target:  5'- ---cGCCGAGcUGCcgcuGGCGGCCGGuCCGa -3'
miRNA:   3'- cuaaCGGCUC-AUG----UUGCUGGCC-GGCg -5'
23079 3' -54.3 NC_005178.1 + 4929 0.71 0.36889
Target:  5'- aGAUcGCCGAGgaacuggccgcCAGCGGCCGcCCGCu -3'
miRNA:   3'- -CUAaCGGCUCau---------GUUGCUGGCcGGCG- -5'
23079 3' -54.3 NC_005178.1 + 24578 0.72 0.327624
Target:  5'- ---aGCCGGaUAcCGGCGACCugGGCCGCu -3'
miRNA:   3'- cuaaCGGCUcAU-GUUGCUGG--CCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 15883 0.8 0.102979
Target:  5'- uGGUUGCCGcAGgccuuCGACcACCGGCCGCa -3'
miRNA:   3'- -CUAACGGC-UCau---GUUGcUGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 4514 0.75 0.227208
Target:  5'- ---gGCCGAGcgGCAACGcuCCGGCCuGCc -3'
miRNA:   3'- cuaaCGGCUCa-UGUUGCu-GGCCGG-CG- -5'
23079 3' -54.3 NC_005178.1 + 7101 0.74 0.232795
Target:  5'- ---gGUCGAGUGCAgcgaguaccuccaGCGGCCGgcGCCGCu -3'
miRNA:   3'- cuaaCGGCUCAUGU-------------UGCUGGC--CGGCG- -5'
23079 3' -54.3 NC_005178.1 + 33582 0.74 0.239779
Target:  5'- ---gGCCGAcGUGCuggucGCGACCGGCgaCGCg -3'
miRNA:   3'- cuaaCGGCU-CAUGu----UGCUGGCCG--GCG- -5'
23079 3' -54.3 NC_005178.1 + 12640 0.74 0.252925
Target:  5'- ---gGCCGugcuGUACGgcucgGCGGCCGGCgCGCu -3'
miRNA:   3'- cuaaCGGCu---CAUGU-----UGCUGGCCG-GCG- -5'
23079 3' -54.3 NC_005178.1 + 25605 0.74 0.266658
Target:  5'- ---aGCCGA--GCAACGAgCGGCCGa -3'
miRNA:   3'- cuaaCGGCUcaUGUUGCUgGCCGGCg -5'
23079 3' -54.3 NC_005178.1 + 25644 0.73 0.288379
Target:  5'- ---cGCCGAGUu---CGACCGGCaGCa -3'
miRNA:   3'- cuaaCGGCUCAuguuGCUGGCCGgCG- -5'
23079 3' -54.3 NC_005178.1 + 10636 0.73 0.303618
Target:  5'- ---aGCCGGGgcGCAACGccCCGGCCGg -3'
miRNA:   3'- cuaaCGGCUCa-UGUUGCu-GGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.