Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23080 | 5' | -53.8 | NC_005178.1 | + | 1927 | 0.66 | 0.679691 |
Target: 5'- uGCCGCUGUaGAcCUGGAGcgUCAcCGucGCc -3' miRNA: 3'- -CGGCGACG-CUuGACCUCa-AGUaGC--CG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 2850 | 0.66 | 0.706614 |
Target: 5'- uGCCGCgccgggucgaacggaUGCGGaacgGCUGGccagGGUUCAggcuacgggcgCGGCg -3' miRNA: 3'- -CGGCG---------------ACGCU----UGACC----UCAAGUa----------GCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 4020 | 1.15 | 0.000332 |
Target: 5'- cGCCGCUGCGAACUGGAGUUCAUCGGCa -3' miRNA: 3'- -CGGCGACGCUUGACCUCAAGUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 4048 | 0.73 | 0.311728 |
Target: 5'- aCCGCUacuucgcccGCGAGCUGGAGgaauucCA-CGGCg -3' miRNA: 3'- cGGCGA---------CGCUUGACCUCaa----GUaGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 5107 | 0.74 | 0.273856 |
Target: 5'- gGCCGCgUGCuGAGCUGG-GUUC--CGGCc -3' miRNA: 3'- -CGGCG-ACG-CUUGACCuCAAGuaGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 5506 | 0.67 | 0.610379 |
Target: 5'- cGCCaGUUGCGAGacggUGGcgaccagGGUcaggUCGUCGGCg -3' miRNA: 3'- -CGG-CGACGCUUg---ACC-------UCA----AGUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 6102 | 0.67 | 0.655899 |
Target: 5'- gGCCGCcaGCGGuuccuggagcaGCUGGAuaUCAggccagaUCGGCa -3' miRNA: 3'- -CGGCGa-CGCU-----------UGACCUcaAGU-------AGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 6206 | 0.66 | 0.690952 |
Target: 5'- uCCGCgacaugGCGAGCcGuGGGUUCAgucgUCGGg -3' miRNA: 3'- cGGCGa-----CGCUUGaC-CUCAAGU----AGCCg -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 8489 | 0.72 | 0.371207 |
Target: 5'- cGCCuCUG-GAGCUGG-GUUCAaguacaccgUCGGCg -3' miRNA: 3'- -CGGcGACgCUUGACCuCAAGU---------AGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 9681 | 0.66 | 0.713281 |
Target: 5'- aGuuGCccuggGCGGcCUGGAG---GUCGGCg -3' miRNA: 3'- -CggCGa----CGCUuGACCUCaagUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 10004 | 0.7 | 0.458278 |
Target: 5'- gGCC-CUGUucguuGAGCUGGAGgacUUCcagGUCGGCg -3' miRNA: 3'- -CGGcGACG-----CUUGACCUC---AAG---UAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 10255 | 0.79 | 0.118769 |
Target: 5'- cGCUGCUGCGc-CUGGAGcUUCugcUCGGCg -3' miRNA: 3'- -CGGCGACGCuuGACCUC-AAGu--AGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 10461 | 0.7 | 0.437972 |
Target: 5'- gGUgGC-GCGAuCUGGAGaUCGUCGaGCg -3' miRNA: 3'- -CGgCGaCGCUuGACCUCaAGUAGC-CG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 11045 | 0.74 | 0.252954 |
Target: 5'- aGuuGCUGCGAGgcuUUGaccGGUUCGUCGGCc -3' miRNA: 3'- -CggCGACGCUU---GACc--UCAAGUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 12151 | 0.67 | 0.611516 |
Target: 5'- cCCGCgccuaccGCGAcgucCUGGAGca-GUCGGCg -3' miRNA: 3'- cGGCGa------CGCUu---GACCUCaagUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 12917 | 0.71 | 0.389565 |
Target: 5'- gGCCGgUGgUGGGCUGGAGgaCGU-GGCg -3' miRNA: 3'- -CGGCgAC-GCUUGACCUCaaGUAgCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 13218 | 0.69 | 0.489647 |
Target: 5'- gGCCGCUuuGAACggcugggucGGGGccggCGUCGGCa -3' miRNA: 3'- -CGGCGAcgCUUGa--------CCUCaa--GUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 13590 | 0.7 | 0.437972 |
Target: 5'- cUCGaCUGCGAGCUGGAuGcUCAU-GGCc -3' miRNA: 3'- cGGC-GACGCUUGACCU-CaAGUAgCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 14156 | 0.69 | 0.506782 |
Target: 5'- gGCCGCcacgauguuggagGCGAucaaggcggaGCUGGAGUUCAaUCcGCg -3' miRNA: 3'- -CGGCGa------------CGCU----------UGACCUCAAGU-AGcCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 15773 | 0.69 | 0.500326 |
Target: 5'- aGCUGCUGCucGAcCUGGAGggCAUUGa- -3' miRNA: 3'- -CGGCGACG--CUuGACCUCaaGUAGCcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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