Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23080 | 5' | -53.8 | NC_005178.1 | + | 4020 | 1.15 | 0.000332 |
Target: 5'- cGCCGCUGCGAACUGGAGUUCAUCGGCa -3' miRNA: 3'- -CGGCGACGCUUGACCUCAAGUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 32423 | 0.68 | 0.577538 |
Target: 5'- aGCCGgUGCG-GCUGuaucAGUUCAgccgUGGCg -3' miRNA: 3'- -CGGCgACGCuUGACc---UCAAGUa---GCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 12151 | 0.67 | 0.611516 |
Target: 5'- cCCGCgccuaccGCGAcgucCUGGAGca-GUCGGCg -3' miRNA: 3'- cGGCGa------CGCUu---GACCUCaagUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 20917 | 0.67 | 0.622894 |
Target: 5'- cCCGCUccaGGACgccGAGgUCAUCGGCg -3' miRNA: 3'- cGGCGAcg-CUUGac-CUCaAGUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 6206 | 0.66 | 0.690952 |
Target: 5'- uCCGCgacaugGCGAGCcGuGGGUUCAgucgUCGGg -3' miRNA: 3'- cGGCGa-----CGCUUGaC-CUCAAGU----AGCCg -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 35145 | 0.66 | 0.690952 |
Target: 5'- -aCGUUGaCGAacgccagccgGCUGGAGgacgUCAcugUCGGCc -3' miRNA: 3'- cgGCGAC-GCU----------UGACCUCa---AGU---AGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 31070 | 0.66 | 0.695441 |
Target: 5'- cGCCGCUGgGuuuugcugccCUGGAGgaacgCAccuggacggucagcaUCGGCa -3' miRNA: 3'- -CGGCGACgCuu--------GACCUCaa---GU---------------AGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 22440 | 0.66 | 0.713281 |
Target: 5'- aGCCccaGCUGCGcgucgagucCUGcGAGUUCuugccggacgacGUCGGCg -3' miRNA: 3'- -CGG---CGACGCuu-------GAC-CUCAAG------------UAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 16190 | 0.66 | 0.713281 |
Target: 5'- cCUGCUGCGAGC-GGuGacCGgccUCGGCc -3' miRNA: 3'- cGGCGACGCUUGaCCuCaaGU---AGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 14156 | 0.69 | 0.506782 |
Target: 5'- gGCCGCcacgauguuggagGCGAucaaggcggaGCUGGAGUUCAaUCcGCg -3' miRNA: 3'- -CGGCGa------------CGCU----------UGACCUCAAGU-AGcCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 26192 | 0.69 | 0.500326 |
Target: 5'- gGCCGCUGCGGGCgUGGcgcuGGcUC--UGGCg -3' miRNA: 3'- -CGGCGACGCUUG-ACC----UCaAGuaGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 5107 | 0.74 | 0.273856 |
Target: 5'- gGCCGCgUGCuGAGCUGG-GUUC--CGGCc -3' miRNA: 3'- -CGGCG-ACG-CUUGACCuCAAGuaGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 4048 | 0.73 | 0.311728 |
Target: 5'- aCCGCUacuucgcccGCGAGCUGGAGgaauucCA-CGGCg -3' miRNA: 3'- cGGCGA---------CGCUUGACCUCaa----GUaGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 8489 | 0.72 | 0.371207 |
Target: 5'- cGCCuCUG-GAGCUGG-GUUCAaguacaccgUCGGCg -3' miRNA: 3'- -CGGcGACgCUUGACCuCAAGU---------AGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 12917 | 0.71 | 0.389565 |
Target: 5'- gGCCGgUGgUGGGCUGGAGgaCGU-GGCg -3' miRNA: 3'- -CGGCgAC-GCUUGACCUCaaGUAgCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 28295 | 0.71 | 0.415271 |
Target: 5'- cGgCGCUGCGGgagcugccggggccGCUGGAGUggCuggUGGCg -3' miRNA: 3'- -CgGCGACGCU--------------UGACCUCAa-Gua-GCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 10461 | 0.7 | 0.437972 |
Target: 5'- gGUgGC-GCGAuCUGGAGaUCGUCGaGCg -3' miRNA: 3'- -CGgCGaCGCUuGACCUCaAGUAGC-CG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 37517 | 0.7 | 0.479076 |
Target: 5'- gGCCGauucCUGCG----GGAGggCAUCGGCa -3' miRNA: 3'- -CGGC----GACGCuugaCCUCaaGUAGCCG- -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 15773 | 0.69 | 0.500326 |
Target: 5'- aGCUGCUGCucGAcCUGGAGggCAUUGa- -3' miRNA: 3'- -CGGCGACG--CUuGACCUCaaGUAGCcg -5' |
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23080 | 5' | -53.8 | NC_005178.1 | + | 32618 | 0.66 | 0.713281 |
Target: 5'- gGCCGCUgGCGGcC---AGUUCcUCGGCg -3' miRNA: 3'- -CGGCGA-CGCUuGaccUCAAGuAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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