miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23081 5' -60 NC_005178.1 + 10838 0.66 0.387065
Target:  5'- cGUCCcaggcgCCCuUGGCCacccCGGCaACGGUCu -3'
miRNA:   3'- aCAGGua----GGG-GCCGGa---GCCG-UGCUAG- -5'
23081 5' -60 NC_005178.1 + 14869 0.66 0.344034
Target:  5'- -aUCCAg-CUCGGCCUgGGCGaGGUCg -3'
miRNA:   3'- acAGGUagGGGCCGGAgCCGUgCUAG- -5'
23081 5' -60 NC_005178.1 + 14999 0.67 0.297088
Target:  5'- gUGgCCAUCCgUGGCCa-GGgGCGGUCc -3'
miRNA:   3'- -ACaGGUAGGgGCCGGagCCgUGCUAG- -5'
23081 5' -60 NC_005178.1 + 20638 0.68 0.289764
Target:  5'- cGUCCAUauccgggaaugCCUCGGCCagGGCGcCGAg- -3'
miRNA:   3'- aCAGGUA-----------GGGGCCGGagCCGU-GCUag -5'
23081 5' -60 NC_005178.1 + 21227 0.68 0.275544
Target:  5'- --cCCGcUCCCCGGCCggccgcaucaUCGGCGuCGAa- -3'
miRNA:   3'- acaGGU-AGGGGCCGG----------AGCCGU-GCUag -5'
23081 5' -60 NC_005178.1 + 10060 0.68 0.275544
Target:  5'- uUGaCCAuguugUUCCUGGCCUCGGCGaucuucUGGUCc -3'
miRNA:   3'- -ACaGGU-----AGGGGCCGGAGCCGU------GCUAG- -5'
23081 5' -60 NC_005178.1 + 17170 0.68 0.261888
Target:  5'- cGUCCAgggCCGGCUUCaGgGCGGUCa -3'
miRNA:   3'- aCAGGUaggGGCCGGAGcCgUGCUAG- -5'
23081 5' -60 NC_005178.1 + 20155 0.69 0.248787
Target:  5'- cGUCUucagcuacgCCCCGGa--CGGCACGGUCc -3'
miRNA:   3'- aCAGGua-------GGGGCCggaGCCGUGCUAG- -5'
23081 5' -60 NC_005178.1 + 27719 0.69 0.230157
Target:  5'- cGUCCAUgCCCagcugGGCCUUGGCGaugugGAUUu -3'
miRNA:   3'- aCAGGUAgGGG-----CCGGAGCCGUg----CUAG- -5'
23081 5' -60 NC_005178.1 + 29289 0.7 0.196427
Target:  5'- aGUgCGUCCCCGcCCUCGGUuuGGUUu -3'
miRNA:   3'- aCAgGUAGGGGCcGGAGCCGugCUAG- -5'
23081 5' -60 NC_005178.1 + 9422 0.75 0.079796
Target:  5'- cGUCCAcugagcgaaaccgCCCCGGCCUagcCGGgACGGUCu -3'
miRNA:   3'- aCAGGUa------------GGGGCCGGA---GCCgUGCUAG- -5'
23081 5' -60 NC_005178.1 + 4326 1.09 0.000191
Target:  5'- cUGUCCAUCCCCGGCCUCGGCACGAUCa -3'
miRNA:   3'- -ACAGGUAGGGGCCGGAGCCGUGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.