miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23083 5' -61.2 NC_005178.1 + 1214 0.68 0.223242
Target:  5'- uGCCGGCGaaUCGUCCGCUGucgggCAUCa -3'
miRNA:   3'- gCGGUCGCc-GGCGGGCGACua---GUAGc -5'
23083 5' -61.2 NC_005178.1 + 2161 0.72 0.120157
Target:  5'- gGCCAGuUGGCC-CUCGCUGGUguUCGu -3'
miRNA:   3'- gCGGUC-GCCGGcGGGCGACUAguAGC- -5'
23083 5' -61.2 NC_005178.1 + 4057 0.67 0.280797
Target:  5'- uGCCGGUGGCaguaGCCCuGUcgagUGGUCcagGUCGg -3'
miRNA:   3'- gCGGUCGCCGg---CGGG-CG----ACUAG---UAGC- -5'
23083 5' -61.2 NC_005178.1 + 4947 1.09 0.000171
Target:  5'- cCGCCAGCGGCCGCCCGCUGAUCAUCGa -3'
miRNA:   3'- -GCGGUCGCCGGCGGGCGACUAGUAGC- -5'
23083 5' -61.2 NC_005178.1 + 5771 0.7 0.17603
Target:  5'- -uCCAGCacuGGCCGCCCcCUGuagGUCGUCGc -3'
miRNA:   3'- gcGGUCG---CCGGCGGGcGAC---UAGUAGC- -5'
23083 5' -61.2 NC_005178.1 + 7121 0.72 0.126988
Target:  5'- -uCCAGCGGCCgGCgCCGCUGAacaacccCGUCGc -3'
miRNA:   3'- gcGGUCGCCGG-CG-GGCGACUa------GUAGC- -5'
23083 5' -61.2 NC_005178.1 + 8311 0.67 0.260399
Target:  5'- aGCCGGCgccGGCCGaCUCGUaGAUCGUg- -3'
miRNA:   3'- gCGGUCG---CCGGC-GGGCGaCUAGUAgc -5'
23083 5' -61.2 NC_005178.1 + 8842 0.67 0.280797
Target:  5'- uGCCGGCccacaugucGGCCGCCauCUGGUCGg-- -3'
miRNA:   3'- gCGGUCG---------CCGGCGGgcGACUAGUagc -5'
23083 5' -61.2 NC_005178.1 + 9851 0.66 0.295089
Target:  5'- uCGUCAa-GGCUGCCaCGCUGAUCGa-- -3'
miRNA:   3'- -GCGGUcgCCGGCGG-GCGACUAGUagc -5'
23083 5' -61.2 NC_005178.1 + 10953 0.68 0.216939
Target:  5'- gGCCAGUugGGCgGCCCcagcgaaucccuuGCUGAUCGagGg -3'
miRNA:   3'- gCGGUCG--CCGgCGGG-------------CGACUAGUagC- -5'
23083 5' -61.2 NC_005178.1 + 11101 0.66 0.317577
Target:  5'- gGCCGGCaGcGCCGCgCUGCUGAaaauguuuggCAUCc -3'
miRNA:   3'- gCGGUCG-C-CGGCG-GGCGACUa---------GUAGc -5'
23083 5' -61.2 NC_005178.1 + 11337 0.78 0.041979
Target:  5'- aGCCAGCGGUCgGCCUGCUGuUCGUUu -3'
miRNA:   3'- gCGGUCGCCGG-CGGGCGACuAGUAGc -5'
23083 5' -61.2 NC_005178.1 + 12052 0.75 0.066502
Target:  5'- cCGCUGGUGGCUGCCCGCgUGGcgguguUCAUCc -3'
miRNA:   3'- -GCGGUCGCCGGCGGGCG-ACU------AGUAGc -5'
23083 5' -61.2 NC_005178.1 + 12146 0.71 0.137912
Target:  5'- uCGCCuuGauccgGGCCGCCUGCUGGUCGg-- -3'
miRNA:   3'- -GCGGu-Cg----CCGGCGGGCGACUAGUagc -5'
23083 5' -61.2 NC_005178.1 + 12284 0.69 0.211896
Target:  5'- uGCCc-UGGCCGaaaCCGCUGGUgAUCGc -3'
miRNA:   3'- gCGGucGCCGGCg--GGCGACUAgUAGC- -5'
23083 5' -61.2 NC_005178.1 + 12688 0.68 0.223242
Target:  5'- uGCCuGCGGCCuGCUCGCggcGcgUAUCa -3'
miRNA:   3'- gCGGuCGCCGG-CGGGCGa--CuaGUAGc -5'
23083 5' -61.2 NC_005178.1 + 14022 0.67 0.260399
Target:  5'- gGCCAGCGGagugaCGCCC--UGAUCAg-- -3'
miRNA:   3'- gCGGUCGCCg----GCGGGcgACUAGUagc -5'
23083 5' -61.2 NC_005178.1 + 14144 0.68 0.247482
Target:  5'- aCGUCAGCacGGCUGCCCaguGCUGGgugacCGUCu -3'
miRNA:   3'- -GCGGUCG--CCGGCGGG---CGACUa----GUAGc -5'
23083 5' -61.2 NC_005178.1 + 16445 0.75 0.070405
Target:  5'- cCGCCAGCucGCCGCCaCGCUGA--GUCGc -3'
miRNA:   3'- -GCGGUCGc-CGGCGG-GCGACUagUAGC- -5'
23083 5' -61.2 NC_005178.1 + 19957 0.7 0.166822
Target:  5'- aCGCCAGCGGCCGCC-----GUCAaCGg -3'
miRNA:   3'- -GCGGUCGCCGGCGGgcgacUAGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.