miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23083 5' -61.2 NC_005178.1 + 4947 1.09 0.000171
Target:  5'- cCGCCAGCGGCCGCCCGCUGAUCAUCGa -3'
miRNA:   3'- -GCGGUCGCCGGCGGGCGACUAGUAGC- -5'
23083 5' -61.2 NC_005178.1 + 23465 0.66 0.333272
Target:  5'- gCGcCCGGCGcgaaGCCgGCCCGCUGcUCGgcCGg -3'
miRNA:   3'- -GC-GGUCGC----CGG-CGGGCGACuAGUa-GC- -5'
23083 5' -61.2 NC_005178.1 + 20478 0.66 0.325354
Target:  5'- cCGCC-GCcaCCGCCCaGCUGAagGUCGc -3'
miRNA:   3'- -GCGGuCGccGGCGGG-CGACUagUAGC- -5'
23083 5' -61.2 NC_005178.1 + 11101 0.66 0.317577
Target:  5'- gGCCGGCaGcGCCGCgCUGCUGAaaauguuuggCAUCc -3'
miRNA:   3'- gCGGUCG-C-CGGCG-GGCGACUa---------GUAGc -5'
23083 5' -61.2 NC_005178.1 + 25884 0.66 0.317577
Target:  5'- gGCCAuGCGGCaguuGCCgGCgcaGAUCAcCGa -3'
miRNA:   3'- gCGGU-CGCCGg---CGGgCGa--CUAGUaGC- -5'
23083 5' -61.2 NC_005178.1 + 21228 0.66 0.295089
Target:  5'- cCGCUcccCGGCCGgCCGC--AUCAUCGg -3'
miRNA:   3'- -GCGGuc-GCCGGCgGGCGacUAGUAGC- -5'
23083 5' -61.2 NC_005178.1 + 29196 0.67 0.287873
Target:  5'- uCGCCAaCGGCCGCagGUucuggaUGGUCGUCa -3'
miRNA:   3'- -GCGGUcGCCGGCGggCG------ACUAGUAGc -5'
23083 5' -61.2 NC_005178.1 + 24441 0.68 0.241224
Target:  5'- gGCCGaaGGCgGCgCGCcGGUCAUCGu -3'
miRNA:   3'- gCGGUcgCCGgCGgGCGaCUAGUAGC- -5'
23083 5' -61.2 NC_005178.1 + 12688 0.68 0.223242
Target:  5'- uGCCuGCGGCCuGCUCGCggcGcgUAUCa -3'
miRNA:   3'- gCGGuCGCCGG-CGGGCGa--CuaGUAGc -5'
23083 5' -61.2 NC_005178.1 + 11337 0.78 0.041979
Target:  5'- aGCCAGCGGUCgGCCUGCUGuUCGUUu -3'
miRNA:   3'- gCGGUCGCCGG-CGGGCGACuAGUAGc -5'
23083 5' -61.2 NC_005178.1 + 31462 0.77 0.0485
Target:  5'- cCGCUGGCGGCCgGCUCGCUGAaCAUUc -3'
miRNA:   3'- -GCGGUCGCCGG-CGGGCGACUaGUAGc -5'
23083 5' -61.2 NC_005178.1 + 16445 0.75 0.070405
Target:  5'- cCGCCAGCucGCCGCCaCGCUGA--GUCGc -3'
miRNA:   3'- -GCGGUCGc-CGGCGG-GCGACUagUAGC- -5'
23083 5' -61.2 NC_005178.1 + 7121 0.72 0.126988
Target:  5'- -uCCAGCGGCCgGCgCCGCUGAacaacccCGUCGc -3'
miRNA:   3'- gcGGUCGCCGG-CG-GGCGACUa------GUAGC- -5'
23083 5' -61.2 NC_005178.1 + 35118 0.71 0.153819
Target:  5'- cCGCUGGCGGCCgGUCCGaacGUCGUCa -3'
miRNA:   3'- -GCGGUCGCCGG-CGGGCgacUAGUAGc -5'
23083 5' -61.2 NC_005178.1 + 12284 0.69 0.211896
Target:  5'- uGCCc-UGGCCGaaaCCGCUGGUgAUCGc -3'
miRNA:   3'- gCGGucGCCGGCg--GGCGACUAgUAGC- -5'
23083 5' -61.2 NC_005178.1 + 30052 0.66 0.333272
Target:  5'- uGCCGGCGaaGUCGCgguaGCUGAUCGguUCGc -3'
miRNA:   3'- gCGGUCGC--CGGCGgg--CGACUAGU--AGC- -5'
23083 5' -61.2 NC_005178.1 + 35857 0.74 0.085875
Target:  5'- aGCCAcGCGGCCGCCaCGCa---CAUCGa -3'
miRNA:   3'- gCGGU-CGCCGGCGG-GCGacuaGUAGC- -5'
23083 5' -61.2 NC_005178.1 + 2161 0.72 0.120157
Target:  5'- gGCCAGuUGGCC-CUCGCUGGUguUCGu -3'
miRNA:   3'- gCGGUC-GCCGGcGGGCGACUAguAGC- -5'
23083 5' -61.2 NC_005178.1 + 12146 0.71 0.137912
Target:  5'- uCGCCuuGauccgGGCCGCCUGCUGGUCGg-- -3'
miRNA:   3'- -GCGGu-Cg----CCGGCGGGCGACUAGUagc -5'
23083 5' -61.2 NC_005178.1 + 19957 0.7 0.166822
Target:  5'- aCGCCAGCGGCCGCC-----GUCAaCGg -3'
miRNA:   3'- -GCGGUCGCCGGCGGgcgacUAGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.