miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23086 3' -63.4 NC_005178.1 + 1992 0.66 0.264001
Target:  5'- cCGCUGCAgcagaGGUcGCGGCCU--GGCu -3'
miRNA:   3'- aGCGGCGUag---CCAcCGCCGGAgcCCG- -5'
23086 3' -63.4 NC_005178.1 + 31692 0.66 0.257524
Target:  5'- -gGCCGagggcCGGUGuaGCGGCCUggcuugaGGGCg -3'
miRNA:   3'- agCGGCgua--GCCAC--CGCCGGAg------CCCG- -5'
23086 3' -63.4 NC_005178.1 + 16813 0.66 0.251178
Target:  5'- gCGCUcuGCuGUUGGgucagGGCGGCgaUGGGCu -3'
miRNA:   3'- aGCGG--CG-UAGCCa----CCGCCGgaGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 29402 0.66 0.244346
Target:  5'- gUCGUCcccacggGCGaucUCGaUGGCGcCCUCGGGCa -3'
miRNA:   3'- -AGCGG-------CGU---AGCcACCGCcGGAGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 14762 0.66 0.238872
Target:  5'- cUCGCCGUAcugcUCGaccaGGuCGGCCUgGGuGCa -3'
miRNA:   3'- -AGCGGCGU----AGCca--CC-GCCGGAgCC-CG- -5'
23086 3' -63.4 NC_005178.1 + 20971 0.67 0.23528
Target:  5'- uUCGCCGgcgcCAUCGucGUGGCGaacgcuaccggguucGCCgUGGGCg -3'
miRNA:   3'- -AGCGGC----GUAGC--CACCGC---------------CGGaGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 22584 0.67 0.221363
Target:  5'- -aGgCGCuugCGGaUGGCGGCCUCGa-- -3'
miRNA:   3'- agCgGCGua-GCC-ACCGCCGGAGCccg -5'
23086 3' -63.4 NC_005178.1 + 12644 0.67 0.215774
Target:  5'- gUGCUGUA-CGGcucGGCGGCCggcgcgcuggCGGGUg -3'
miRNA:   3'- aGCGGCGUaGCCa--CCGCCGGa---------GCCCG- -5'
23086 3' -63.4 NC_005178.1 + 17801 0.67 0.204959
Target:  5'- aUGCCGCcaUGGUGGCgacGGUCgagCGcGGCg -3'
miRNA:   3'- aGCGGCGuaGCCACCG---CCGGa--GC-CCG- -5'
23086 3' -63.4 NC_005178.1 + 26706 0.67 0.204959
Target:  5'- cCGuuGC--CGG-GGUGGCCaaGGGCg -3'
miRNA:   3'- aGCggCGuaGCCaCCGCCGGagCCCG- -5'
23086 3' -63.4 NC_005178.1 + 9878 0.67 0.199729
Target:  5'- cUCGCuCGCGUCGcG-GGCGuGCgCUCGGcCa -3'
miRNA:   3'- -AGCG-GCGUAGC-CaCCGC-CG-GAGCCcG- -5'
23086 3' -63.4 NC_005178.1 + 33124 0.67 0.199729
Target:  5'- -gGUgGCuUgGGUGGUGGCUgcggUCGGGUg -3'
miRNA:   3'- agCGgCGuAgCCACCGCCGG----AGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 30158 0.67 0.199213
Target:  5'- gCGUgGCGUCGGcuauacgGGCGGCCaguauguUUGcGGCu -3'
miRNA:   3'- aGCGgCGUAGCCa------CCGCCGG-------AGC-CCG- -5'
23086 3' -63.4 NC_005178.1 + 11297 0.68 0.194616
Target:  5'- uUCGaguCCGCccaGGUGGUGGCC--GGGCu -3'
miRNA:   3'- -AGC---GGCGuagCCACCGCCGGagCCCG- -5'
23086 3' -63.4 NC_005178.1 + 18193 0.68 0.189618
Target:  5'- -gGCUGCG-CGGUGGCGuCUaUGGGCc -3'
miRNA:   3'- agCGGCGUaGCCACCGCcGGaGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 23396 0.68 0.184733
Target:  5'- aUCGCCuccaaCAUC-GUGGCGGCCuguUCGaaGGCa -3'
miRNA:   3'- -AGCGGc----GUAGcCACCGCCGG---AGC--CCG- -5'
23086 3' -63.4 NC_005178.1 + 17160 0.68 0.175296
Target:  5'- gUCGCCuggGCGUCcagGGcCGGCUUCaGGGCg -3'
miRNA:   3'- -AGCGG---CGUAGccaCC-GCCGGAG-CCCG- -5'
23086 3' -63.4 NC_005178.1 + 16191 0.69 0.16629
Target:  5'- cUGCUGCGagCGGUGacCGGCCUCGGcCa -3'
miRNA:   3'- aGCGGCGUa-GCCACc-GCCGGAGCCcG- -5'
23086 3' -63.4 NC_005178.1 + 5260 0.69 0.161945
Target:  5'- cUCGaCCaCGUCGGUGGCGGCgCUacaGaGCg -3'
miRNA:   3'- -AGC-GGcGUAGCCACCGCCG-GAg--CcCG- -5'
23086 3' -63.4 NC_005178.1 + 25182 0.69 0.149516
Target:  5'- -gGCCGC--CGGUaGUGGCCU-GGGCg -3'
miRNA:   3'- agCGGCGuaGCCAcCGCCGGAgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.