miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23086 3' -63.4 NC_005178.1 + 33124 0.67 0.199729
Target:  5'- -gGUgGCuUgGGUGGUGGCUgcggUCGGGUg -3'
miRNA:   3'- agCGgCGuAgCCACCGCCGG----AGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 17801 0.67 0.204959
Target:  5'- aUGCCGCcaUGGUGGCgacGGUCgagCGcGGCg -3'
miRNA:   3'- aGCGGCGuaGCCACCG---CCGGa--GC-CCG- -5'
23086 3' -63.4 NC_005178.1 + 26706 0.67 0.204959
Target:  5'- cCGuuGC--CGG-GGUGGCCaaGGGCg -3'
miRNA:   3'- aGCggCGuaGCCaCCGCCGGagCCCG- -5'
23086 3' -63.4 NC_005178.1 + 12644 0.67 0.215774
Target:  5'- gUGCUGUA-CGGcucGGCGGCCggcgcgcuggCGGGUg -3'
miRNA:   3'- aGCGGCGUaGCCa--CCGCCGGa---------GCCCG- -5'
23086 3' -63.4 NC_005178.1 + 22584 0.67 0.221363
Target:  5'- -aGgCGCuugCGGaUGGCGGCCUCGa-- -3'
miRNA:   3'- agCgGCGua-GCC-ACCGCCGGAGCccg -5'
23086 3' -63.4 NC_005178.1 + 20971 0.67 0.23528
Target:  5'- uUCGCCGgcgcCAUCGucGUGGCGaacgcuaccggguucGCCgUGGGCg -3'
miRNA:   3'- -AGCGGC----GUAGC--CACCGC---------------CGGaGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 14762 0.66 0.238872
Target:  5'- cUCGCCGUAcugcUCGaccaGGuCGGCCUgGGuGCa -3'
miRNA:   3'- -AGCGGCGU----AGCca--CC-GCCGGAgCC-CG- -5'
23086 3' -63.4 NC_005178.1 + 29402 0.66 0.244346
Target:  5'- gUCGUCcccacggGCGaucUCGaUGGCGcCCUCGGGCa -3'
miRNA:   3'- -AGCGG-------CGU---AGCcACCGCcGGAGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 16813 0.66 0.251178
Target:  5'- gCGCUcuGCuGUUGGgucagGGCGGCgaUGGGCu -3'
miRNA:   3'- aGCGG--CG-UAGCCa----CCGCCGgaGCCCG- -5'
23086 3' -63.4 NC_005178.1 + 31692 0.66 0.257524
Target:  5'- -gGCCGagggcCGGUGuaGCGGCCUggcuugaGGGCg -3'
miRNA:   3'- agCGGCgua--GCCAC--CGCCGGAg------CCCG- -5'
23086 3' -63.4 NC_005178.1 + 1992 0.66 0.264001
Target:  5'- cCGCUGCAgcagaGGUcGCGGCCU--GGCu -3'
miRNA:   3'- aGCGGCGUag---CCAcCGCCGGAgcCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.