Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23086 | 3' | -63.4 | NC_005178.1 | + | 5260 | 0.69 | 0.161945 |
Target: 5'- cUCGaCCaCGUCGGUGGCGGCgCUacaGaGCg -3' miRNA: 3'- -AGC-GGcGUAGCCACCGCCG-GAg--CcCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 6924 | 0.7 | 0.13214 |
Target: 5'- gUGCUGCcgaaAUCGGUGGCGGUUccgcgcuggagcagCGGGUa -3' miRNA: 3'- aGCGGCG----UAGCCACCGCCGGa-------------GCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 17043 | 0.71 | 0.111052 |
Target: 5'- uUCGCCGgGUCGGgguuaccgggGGCGGCgacCUucagcUGGGCg -3' miRNA: 3'- -AGCGGCgUAGCCa---------CCGCCG---GA-----GCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 5307 | 0.71 | 0.105136 |
Target: 5'- gCGCUaCAUCGGUcggcucgaccaGGCGGCC-CaGGGCg -3' miRNA: 3'- aGCGGcGUAGCCA-----------CCGCCGGaG-CCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 2119 | 0.73 | 0.081779 |
Target: 5'- gCGCCcggucagcgucagGCuGUCGGUGGCGGCCagcgcCGGGg -3' miRNA: 3'- aGCGG-------------CG-UAGCCACCGCCGGa----GCCCg -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 32271 | 0.77 | 0.035212 |
Target: 5'- gCGCCgGCccugaaCGGUGGCGGCCUCGGcCa -3' miRNA: 3'- aGCGG-CGua----GCCACCGCCGGAGCCcG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 29402 | 0.66 | 0.244346 |
Target: 5'- gUCGUCcccacggGCGaucUCGaUGGCGcCCUCGGGCa -3' miRNA: 3'- -AGCGG-------CGU---AGCcACCGCcGGAGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 14762 | 0.66 | 0.238872 |
Target: 5'- cUCGCCGUAcugcUCGaccaGGuCGGCCUgGGuGCa -3' miRNA: 3'- -AGCGGCGU----AGCca--CC-GCCGGAgCC-CG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 17801 | 0.67 | 0.204959 |
Target: 5'- aUGCCGCcaUGGUGGCgacGGUCgagCGcGGCg -3' miRNA: 3'- aGCGGCGuaGCCACCG---CCGGa--GC-CCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 33124 | 0.67 | 0.199729 |
Target: 5'- -gGUgGCuUgGGUGGUGGCUgcggUCGGGUg -3' miRNA: 3'- agCGgCGuAgCCACCGCCGG----AGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 17160 | 0.68 | 0.175296 |
Target: 5'- gUCGCCuggGCGUCcagGGcCGGCUUCaGGGCg -3' miRNA: 3'- -AGCGG---CGUAGccaCC-GCCGGAG-CCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 16813 | 0.66 | 0.251178 |
Target: 5'- gCGCUcuGCuGUUGGgucagGGCGGCgaUGGGCu -3' miRNA: 3'- aGCGG--CG-UAGCCa----CCGCCGgaGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 23396 | 0.68 | 0.184733 |
Target: 5'- aUCGCCuccaaCAUC-GUGGCGGCCuguUCGaaGGCa -3' miRNA: 3'- -AGCGGc----GUAGcCACCGCCGG---AGC--CCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 22584 | 0.67 | 0.221363 |
Target: 5'- -aGgCGCuugCGGaUGGCGGCCUCGa-- -3' miRNA: 3'- agCgGCGua-GCC-ACCGCCGGAGCccg -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 31692 | 0.66 | 0.257524 |
Target: 5'- -gGCCGagggcCGGUGuaGCGGCCUggcuugaGGGCg -3' miRNA: 3'- agCGGCgua--GCCAC--CGCCGGAg------CCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 25182 | 0.69 | 0.149516 |
Target: 5'- -gGCCGC--CGGUaGUGGCCU-GGGCg -3' miRNA: 3'- agCGGCGuaGCCAcCGCCGGAgCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 1992 | 0.66 | 0.264001 |
Target: 5'- cCGCUGCAgcagaGGUcGCGGCCU--GGCu -3' miRNA: 3'- aGCGGCGUag---CCAcCGCCGGAgcCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 20971 | 0.67 | 0.23528 |
Target: 5'- uUCGCCGgcgcCAUCGucGUGGCGaacgcuaccggguucGCCgUGGGCg -3' miRNA: 3'- -AGCGGC----GUAGC--CACCGC---------------CGGaGCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 12644 | 0.67 | 0.215774 |
Target: 5'- gUGCUGUA-CGGcucGGCGGCCggcgcgcuggCGGGUg -3' miRNA: 3'- aGCGGCGUaGCCa--CCGCCGGa---------GCCCG- -5' |
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23086 | 3' | -63.4 | NC_005178.1 | + | 26706 | 0.67 | 0.204959 |
Target: 5'- cCGuuGC--CGG-GGUGGCCaaGGGCg -3' miRNA: 3'- aGCggCGuaGCCaCCGCCGGagCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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