Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 18023 | 0.66 | 0.643949 |
Target: 5'- gGC-UGGCGuGGUAUCGGCCAgugacACCg -3' miRNA: 3'- gCGuGCCGCuUCAUGGUCGGUgu---UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 8658 | 0.66 | 0.689099 |
Target: 5'- uCGUA-GGCcugc--CCAGCCGCGACCa -3' miRNA: 3'- -GCGUgCCGcuucauGGUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 6148 | 0.66 | 0.643949 |
Target: 5'- aGCGCcGCGAAG-GCUAGCacaAGCCa -3' miRNA: 3'- gCGUGcCGCUUCaUGGUCGgugUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 6408 | 0.66 | 0.655282 |
Target: 5'- uGuCGCGGCGAGGcGC--GCCGCGAUg -3' miRNA: 3'- gC-GUGCCGCUUCaUGguCGGUGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 6952 | 0.66 | 0.677869 |
Target: 5'- aGC-CGGCGAGGcaaucgGCaugAGCCGuuCGACCg -3' miRNA: 3'- gCGuGCCGCUUCa-----UGg--UCGGU--GUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 16144 | 0.66 | 0.666593 |
Target: 5'- gGCuCGG-GAAGUACCcGCC-CGGCa -3' miRNA: 3'- gCGuGCCgCUUCAUGGuCGGuGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 23465 | 0.66 | 0.666593 |
Target: 5'- gCGCcCGGCGcgaaGCCGGCCcgcugcuCGGCCg -3' miRNA: 3'- -GCGuGCCGCuucaUGGUCGGu------GUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 34987 | 0.66 | 0.666593 |
Target: 5'- cCGCGCuGGcCGAGGcgccgACCAGCCugucGCAgaGCUa -3' miRNA: 3'- -GCGUG-CC-GCUUCa----UGGUCGG----UGU--UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 34820 | 0.66 | 0.666593 |
Target: 5'- uGC-CGGCGAcaaccggcguGGcGCC-GCCACcACCg -3' miRNA: 3'- gCGuGCCGCU----------UCaUGGuCGGUGuUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 29030 | 0.67 | 0.598611 |
Target: 5'- aGCuACGGCGA--UACCGcCCugGACUa -3' miRNA: 3'- gCG-UGCCGCUucAUGGUcGGugUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 21573 | 0.67 | 0.632605 |
Target: 5'- aGCcgaACGGCuGGAGUACCucGcCCGCGAUg -3' miRNA: 3'- gCG---UGCCG-CUUCAUGGu-C-GGUGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 10258 | 0.67 | 0.598611 |
Target: 5'- aCGCAuCGGCc---UGCCGGCCACG-CUg -3' miRNA: 3'- -GCGU-GCCGcuucAUGGUCGGUGUuGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 6748 | 0.67 | 0.587327 |
Target: 5'- aCGC-CGGCccAGGUcgaGGCCGCGACCg -3' miRNA: 3'- -GCGuGCCGc-UUCAuggUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 31990 | 0.67 | 0.637143 |
Target: 5'- uGCGCGGCcAgcagaagccgcuaugGGUGCCGacccacGCCgACGACCu -3' miRNA: 3'- gCGUGCCGcU---------------UCAUGGU------CGG-UGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 5976 | 0.67 | 0.62126 |
Target: 5'- gGC-CGGCGGcGGUACU-GCCuuGACCu -3' miRNA: 3'- gCGuGCCGCU-UCAUGGuCGGugUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 18436 | 0.67 | 0.613324 |
Target: 5'- aCGCuuCGGCGGAGcgagccucaucguCCAGCCAguccgcaUAGCCu -3' miRNA: 3'- -GCGu-GCCGCUUCau-----------GGUCGGU-------GUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 30276 | 0.67 | 0.598611 |
Target: 5'- aGCgGCGGCGGcagcGUGCUgcGGCUagACAGCCu -3' miRNA: 3'- gCG-UGCCGCUu---CAUGG--UCGG--UGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 28510 | 0.67 | 0.587327 |
Target: 5'- aGCGCGGCGcggcauugcuccAGGUcgaaGCCGGCaACGGCg -3' miRNA: 3'- gCGUGCCGC------------UUCA----UGGUCGgUGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 35539 | 0.67 | 0.609925 |
Target: 5'- -aCugGGCGAAGcgcgACCgcauuGGCCAggcCGACCa -3' miRNA: 3'- gcGugCCGCUUCa---UGG-----UCGGU---GUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 21110 | 0.67 | 0.598611 |
Target: 5'- aGCgugGCGGCGAGcUGgCGGgcauCCGCAGCCa -3' miRNA: 3'- gCG---UGCCGCUUcAUgGUC----GGUGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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