miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 6408 0.66 0.655282
Target:  5'- uGuCGCGGCGAGGcGC--GCCGCGAUg -3'
miRNA:   3'- gC-GUGCCGCUUCaUGguCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 37373 0.66 0.689099
Target:  5'- gGUAUGGaCGAGGUGCUuagacagaGGCUGCGGgCg -3'
miRNA:   3'- gCGUGCC-GCUUCAUGG--------UCGGUGUUgG- -5'
23087 5' -54.3 NC_005178.1 + 34820 0.66 0.666593
Target:  5'- uGC-CGGCGAcaaccggcguGGcGCC-GCCACcACCg -3'
miRNA:   3'- gCGuGCCGCU----------UCaUGGuCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 4876 0.66 0.655282
Target:  5'- -cCugGGUGAaauGGgcaucaaGCCGGCCGgGACCa -3'
miRNA:   3'- gcGugCCGCU---UCa------UGGUCGGUgUUGG- -5'
23087 5' -54.3 NC_005178.1 + 16144 0.66 0.666593
Target:  5'- gGCuCGG-GAAGUACCcGCC-CGGCa -3'
miRNA:   3'- gCGuGCCgCUUCAUGGuCGGuGUUGg -5'
23087 5' -54.3 NC_005178.1 + 24143 0.66 0.689099
Target:  5'- cCGUgACGGgCGAGGUACUccCCGcCGACCu -3'
miRNA:   3'- -GCG-UGCC-GCUUCAUGGucGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 18825 0.66 0.667722
Target:  5'- gGCACaaugugccuaaucuaGCGucaUGCCAGCCACAACg -3'
miRNA:   3'- gCGUGc--------------CGCuucAUGGUCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 6148 0.66 0.643949
Target:  5'- aGCGCcGCGAAG-GCUAGCacaAGCCa -3'
miRNA:   3'- gCGUGcCGCUUCaUGGUCGgugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 23465 0.66 0.666593
Target:  5'- gCGCcCGGCGcgaaGCCGGCCcgcugcuCGGCCg -3'
miRNA:   3'- -GCGuGCCGCuucaUGGUCGGu------GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 15312 0.66 0.643949
Target:  5'- gGCuuGGCGGuAGUugCGGCUuuGCGuGCCa -3'
miRNA:   3'- gCGugCCGCU-UCAugGUCGG--UGU-UGG- -5'
23087 5' -54.3 NC_005178.1 + 9336 0.66 0.677869
Target:  5'- uGCGCcuGCGAcgAGUGCCuGgCACGGCg -3'
miRNA:   3'- gCGUGc-CGCU--UCAUGGuCgGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 18023 0.66 0.643949
Target:  5'- gGC-UGGCGuGGUAUCGGCCAgugacACCg -3'
miRNA:   3'- gCGuGCCGCuUCAUGGUCGGUgu---UGG- -5'
23087 5' -54.3 NC_005178.1 + 31687 0.66 0.643949
Target:  5'- uGgGCGGcCGAGG-GCCGGUguaGCGGCCu -3'
miRNA:   3'- gCgUGCC-GCUUCaUGGUCGg--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 21495 0.66 0.643949
Target:  5'- gGUACGGCcag--GCCAGCacgcggaACAGCCc -3'
miRNA:   3'- gCGUGCCGcuucaUGGUCGg------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 31050 0.66 0.643949
Target:  5'- gCGCACGGUGGcggcGGUgACCuGGCCG-AACUg -3'
miRNA:   3'- -GCGUGCCGCU----UCA-UGG-UCGGUgUUGG- -5'
23087 5' -54.3 NC_005178.1 + 5119 0.66 0.643949
Target:  5'- gCGcCACGGCuGAAcUGauaCAGCCGC-ACCg -3'
miRNA:   3'- -GC-GUGCCG-CUUcAUg--GUCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 25626 0.66 0.689099
Target:  5'- gGCuGCGGCGAAa-GCCAccGCCGaguuCGACCg -3'
miRNA:   3'- gCG-UGCCGCUUcaUGGU--CGGU----GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 6952 0.66 0.677869
Target:  5'- aGC-CGGCGAGGcaaucgGCaugAGCCGuuCGACCg -3'
miRNA:   3'- gCGuGCCGCUUCa-----UGg--UCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 20140 0.66 0.643949
Target:  5'- uCGUauGCGGCGGcauAGcgcCCGGCCAUguaGGCCg -3'
miRNA:   3'- -GCG--UGCCGCU---UCau-GGUCGGUG---UUGG- -5'
23087 5' -54.3 NC_005178.1 + 34987 0.66 0.666593
Target:  5'- cCGCGCuGGcCGAGGcgccgACCAGCCugucGCAgaGCUa -3'
miRNA:   3'- -GCGUG-CC-GCUUCa----UGGUCGG----UGU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.