miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 5951 1.11 0.000574
Target:  5'- uCGCACGGCGAAGUACCAGCCACAACCc -3'
miRNA:   3'- -GCGUGCCGCUUCAUGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 14674 0.8 0.100013
Target:  5'- cCGCAuCGGCGAua-GCCugGGCCACGACCg -3'
miRNA:   3'- -GCGU-GCCGCUucaUGG--UCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 22804 0.8 0.100013
Target:  5'- aGUACGGCGAGGcguccauccGCCAGCUgaGCGACCg -3'
miRNA:   3'- gCGUGCCGCUUCa--------UGGUCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 27356 0.78 0.133632
Target:  5'- aGCGCGGCGAAcugAUCAGCCAgAACa -3'
miRNA:   3'- gCGUGCCGCUUca-UGGUCGGUgUUGg -5'
23087 5' -54.3 NC_005178.1 + 11185 0.77 0.158531
Target:  5'- gGuCGCGGUGAuuuccgacAGUACC-GCCACGGCCu -3'
miRNA:   3'- gC-GUGCCGCU--------UCAUGGuCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 27894 0.76 0.187546
Target:  5'- gGCuCGGCGAAGccACCGGCCGCGcagAUCa -3'
miRNA:   3'- gCGuGCCGCUUCa-UGGUCGGUGU---UGG- -5'
23087 5' -54.3 NC_005178.1 + 3956 0.75 0.203741
Target:  5'- aGCGCGaGCGc-GUcGCCGGUCGCGACCa -3'
miRNA:   3'- gCGUGC-CGCuuCA-UGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 31792 0.75 0.227209
Target:  5'- uGCugGGCGAcacggucGUGCCcgaGGCCGCcACCg -3'
miRNA:   3'- gCGugCCGCUu------CAUGG---UCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 16594 0.74 0.239779
Target:  5'- gCGC-CGGCGAAG-ACCuggacguuGGCCGCuACCg -3'
miRNA:   3'- -GCGuGCCGCUUCaUGG--------UCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 15973 0.74 0.246279
Target:  5'- uCGCG-GGCGAGGUAcuCCAGCCGuuCGGCUg -3'
miRNA:   3'- -GCGUgCCGCUUCAU--GGUCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 20502 0.74 0.252925
Target:  5'- cCGCAUGGCGAAGaugGCCcGCagauCGGCCu -3'
miRNA:   3'- -GCGUGCCGCUUCa--UGGuCGgu--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 8606 0.74 0.252925
Target:  5'- gCGCACGGCGAuggccGUGCCGGaCGCGGg- -3'
miRNA:   3'- -GCGUGCCGCUu----CAUGGUCgGUGUUgg -5'
23087 5' -54.3 NC_005178.1 + 16606 0.73 0.2788
Target:  5'- aGCugGGCGuccAGGUGCCGGUCaacuggguccaggaGCAGCUg -3'
miRNA:   3'- gCGugCCGC---UUCAUGGUCGG--------------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 11683 0.73 0.286146
Target:  5'- cCGCAuggccUGGCGGuacugaccugccgaAaUGCCGGCCACGGCCa -3'
miRNA:   3'- -GCGU-----GCCGCU--------------UcAUGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 3167 0.73 0.288379
Target:  5'- aGCACuGGCaGggGcaaaugcCCAGCCugGACCa -3'
miRNA:   3'- gCGUG-CCG-CuuCau-----GGUCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 10410 0.73 0.303618
Target:  5'- aGCgGCGGCGAuauuuuCCGGCCGCAGgCg -3'
miRNA:   3'- gCG-UGCCGCUucau--GGUCGGUGUUgG- -5'
23087 5' -54.3 NC_005178.1 + 18500 0.73 0.303618
Target:  5'- gCGCgaGCGGCGAAGggGCgCGGCgCGCAcCCg -3'
miRNA:   3'- -GCG--UGCCGCUUCa-UG-GUCG-GUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 31750 0.73 0.303618
Target:  5'- aGCGCcuGGCccGAGGUaauGCCGGCgACGACCu -3'
miRNA:   3'- gCGUG--CCG--CUUCA---UGGUCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 33574 0.72 0.327624
Target:  5'- gGCAUcgaGGcCGAcGUGCUGGUCGCGACCg -3'
miRNA:   3'- gCGUG---CC-GCUuCAUGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 27452 0.72 0.335932
Target:  5'- -cCACGGCGGcccAGcgcAUCAGCCugGACCa -3'
miRNA:   3'- gcGUGCCGCU---UCa--UGGUCGGugUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.