miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 1078 0.7 0.417453
Target:  5'- gCGCugGGagugGAucaAGUACCAGCUGCGcauCCg -3'
miRNA:   3'- -GCGugCCg---CU---UCAUGGUCGGUGUu--GG- -5'
23087 5' -54.3 NC_005178.1 + 2309 0.67 0.587327
Target:  5'- cCGCGC-GCGAGGgugACCGuGCCGCuGGCg -3'
miRNA:   3'- -GCGUGcCGCUUCa--UGGU-CGGUG-UUGg -5'
23087 5' -54.3 NC_005178.1 + 2459 0.66 0.689099
Target:  5'- aGCucgGCGGCGAguAGU-CCGGUCGgGcACCa -3'
miRNA:   3'- gCG---UGCCGCU--UCAuGGUCGGUgU-UGG- -5'
23087 5' -54.3 NC_005178.1 + 2565 0.66 0.655282
Target:  5'- uGguCGGCGccucgGCCAGC-GCGGCCa -3'
miRNA:   3'- gCguGCCGCuuca-UGGUCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 2664 0.68 0.531682
Target:  5'- gGCGCGGUGGuggauaugAGUACCAcGUUuCGGCCc -3'
miRNA:   3'- gCGUGCCGCU--------UCAUGGU-CGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 2912 0.69 0.509939
Target:  5'- gCGCGCcucGGCcAGGU-CgAGCCGCAGCUg -3'
miRNA:   3'- -GCGUG---CCGcUUCAuGgUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 2984 0.68 0.55375
Target:  5'- aGCGCGGauggcugcCGAGcGUGCgCAGCCugGAgCg -3'
miRNA:   3'- gCGUGCC--------GCUU-CAUG-GUCGGugUUgG- -5'
23087 5' -54.3 NC_005178.1 + 3167 0.73 0.288379
Target:  5'- aGCACuGGCaGggGcaaaugcCCAGCCugGACCa -3'
miRNA:   3'- gCGUG-CCG-CuuCau-----GGUCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 3956 0.75 0.203741
Target:  5'- aGCGCGaGCGc-GUcGCCGGUCGCGACCa -3'
miRNA:   3'- gCGUGC-CGCuuCA-UGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 4079 0.68 0.520766
Target:  5'- -cCACGGCGAccAGgugGCCgugGGCUACGACa -3'
miRNA:   3'- gcGUGCCGCU--UCa--UGG---UCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 4093 0.71 0.398315
Target:  5'- gGCACGGUGugcAGGUGCUgAGCCguaACGAUCa -3'
miRNA:   3'- gCGUGCCGC---UUCAUGG-UCGG---UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 4811 0.68 0.542679
Target:  5'- aCGCACGuuauGCGGcagcuauccacGGUcgGCCAGuCCACAucGCCa -3'
miRNA:   3'- -GCGUGC----CGCU-----------UCA--UGGUC-GGUGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 4876 0.66 0.655282
Target:  5'- -cCugGGUGAaauGGgcaucaaGCCGGCCGgGACCa -3'
miRNA:   3'- gcGugCCGCU---UCa------UGGUCGGUgUUGG- -5'
23087 5' -54.3 NC_005178.1 + 5119 0.66 0.643949
Target:  5'- gCGcCACGGCuGAAcUGauaCAGCCGC-ACCg -3'
miRNA:   3'- -GC-GUGCCG-CUUcAUg--GUCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 5587 0.71 0.358247
Target:  5'- aGCGCGGCGAAGaggucguuuuccaACUGGuCCGCGACa -3'
miRNA:   3'- gCGUGCCGCUUCa------------UGGUC-GGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 5743 0.68 0.542679
Target:  5'- cCGCAuCGGUGgcGgcCuCGGgCACGACCg -3'
miRNA:   3'- -GCGU-GCCGCuuCauG-GUCgGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 5906 0.68 0.542679
Target:  5'- uGCGCGGUGcgcaccGGGUA-CAGUCGCgAGCCa -3'
miRNA:   3'- gCGUGCCGC------UUCAUgGUCGGUG-UUGG- -5'
23087 5' -54.3 NC_005178.1 + 5951 1.11 0.000574
Target:  5'- uCGCACGGCGAAGUACCAGCCACAACCc -3'
miRNA:   3'- -GCGUGCCGCUUCAUGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 5976 0.67 0.62126
Target:  5'- gGC-CGGCGGcGGUACU-GCCuuGACCu -3'
miRNA:   3'- gCGuGCCGCU-UCAUGGuCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 6148 0.66 0.643949
Target:  5'- aGCGCcGCGAAG-GCUAGCacaAGCCa -3'
miRNA:   3'- gCGUGcCGCUUCaUGGUCGgugUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.