miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 11714 0.69 0.454289
Target:  5'- uCGCugGGCGccGUccaacgagaacgacACCcgcgcauauGCCACGGCCg -3'
miRNA:   3'- -GCGugCCGCuuCA--------------UGGu--------CGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 17329 0.72 0.353006
Target:  5'- gGCGgGGcCGAGGUcgcCCAGCUcgGCAGCCc -3'
miRNA:   3'- gCGUgCC-GCUUCAu--GGUCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 27239 0.72 0.353006
Target:  5'- gCGuCACcgaGGCGAAGaACC-GCCugGACCa -3'
miRNA:   3'- -GC-GUG---CCGCUUCaUGGuCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 5587 0.71 0.358247
Target:  5'- aGCGCGGCGAAGaggucguuuuccaACUGGuCCGCGACa -3'
miRNA:   3'- gCGUGCCGCUUCa------------UGGUC-GGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 33921 0.71 0.388031
Target:  5'- uGCuCGGCGGccGGUGCCGGCUuuccgggGCGuuACCa -3'
miRNA:   3'- gCGuGCCGCU--UCAUGGUCGG-------UGU--UGG- -5'
23087 5' -54.3 NC_005178.1 + 17861 0.71 0.388959
Target:  5'- cCGCccuCGGCGAGGU-CCAGgacgugcuCCugGACCc -3'
miRNA:   3'- -GCGu--GCCGCUUCAuGGUC--------GGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 1078 0.7 0.417453
Target:  5'- gCGCugGGagugGAucaAGUACCAGCUGCGcauCCg -3'
miRNA:   3'- -GCGugCCg---CU---UCAUGGUCGGUGUu--GG- -5'
23087 5' -54.3 NC_005178.1 + 24290 0.7 0.426246
Target:  5'- gCGCcuACGGCGAgguccaacugcugGGUcugccgacGCCGGCCcCGACCc -3'
miRNA:   3'- -GCG--UGCCGCU-------------UCA--------UGGUCGGuGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 25343 0.7 0.42723
Target:  5'- cCGC-UGGCGAccaUGCCAGCCAgGcugGCCg -3'
miRNA:   3'- -GCGuGCCGCUuc-AUGGUCGGUgU---UGG- -5'
23087 5' -54.3 NC_005178.1 + 35259 0.72 0.344393
Target:  5'- gCGCGCGGCugcgccGAuaccGUACCGGCCaaGCAucugGCCg -3'
miRNA:   3'- -GCGUGCCG------CUu---CAUGGUCGG--UGU----UGG- -5'
23087 5' -54.3 NC_005178.1 + 36886 0.72 0.339298
Target:  5'- cCGUACuucuacaugacucuaGGCGggGUugCGGCUAUGGCUg -3'
miRNA:   3'- -GCGUG---------------CCGCuuCAugGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 27452 0.72 0.335932
Target:  5'- -cCACGGCGGcccAGcgcAUCAGCCugGACCa -3'
miRNA:   3'- gcGUGCCGCU---UCa--UGGUCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 22804 0.8 0.100013
Target:  5'- aGUACGGCGAGGcguccauccGCCAGCUgaGCGACCg -3'
miRNA:   3'- gCGUGCCGCUUCa--------UGGUCGG--UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 27356 0.78 0.133632
Target:  5'- aGCGCGGCGAAcugAUCAGCCAgAACa -3'
miRNA:   3'- gCGUGCCGCUUca-UGGUCGGUgUUGg -5'
23087 5' -54.3 NC_005178.1 + 15973 0.74 0.246279
Target:  5'- uCGCG-GGCGAGGUAcuCCAGCCGuuCGGCUg -3'
miRNA:   3'- -GCGUgCCGCUUCAU--GGUCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 16606 0.73 0.2788
Target:  5'- aGCugGGCGuccAGGUGCCGGUCaacuggguccaggaGCAGCUg -3'
miRNA:   3'- gCGugCCGC---UUCAUGGUCGG--------------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 3167 0.73 0.288379
Target:  5'- aGCACuGGCaGggGcaaaugcCCAGCCugGACCa -3'
miRNA:   3'- gCGUG-CCG-CuuCau-----GGUCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 31750 0.73 0.303618
Target:  5'- aGCGCcuGGCccGAGGUaauGCCGGCgACGACCu -3'
miRNA:   3'- gCGUG--CCG--CUUCA---UGGUCGgUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 18500 0.73 0.303618
Target:  5'- gCGCgaGCGGCGAAGggGCgCGGCgCGCAcCCg -3'
miRNA:   3'- -GCG--UGCCGCUUCa-UG-GUCG-GUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 33574 0.72 0.327624
Target:  5'- gGCAUcgaGGcCGAcGUGCUGGUCGCGACCg -3'
miRNA:   3'- gCGUG---CC-GCUuCAUGGUCGGUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.