miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 6408 0.66 0.655282
Target:  5'- uGuCGCGGCGAGGcGC--GCCGCGAUg -3'
miRNA:   3'- gC-GUGCCGCUUCaUGguCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 6748 0.67 0.587327
Target:  5'- aCGC-CGGCccAGGUcgaGGCCGCGACCg -3'
miRNA:   3'- -GCGuGCCGc-UUCAuggUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 6952 0.66 0.677869
Target:  5'- aGC-CGGCGAGGcaaucgGCaugAGCCGuuCGACCg -3'
miRNA:   3'- gCGuGCCGCUUCa-----UGg--UCGGU--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 7242 0.66 0.665463
Target:  5'- aGUcCGGCGAugGGcUACCgucgaggcugucuAGCCGCAGCa -3'
miRNA:   3'- gCGuGCCGCU--UC-AUGG-------------UCGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 7629 0.66 0.676743
Target:  5'- uGC-CGGCGAgcugccauugauuGGaACCGGCguugaACGACCa -3'
miRNA:   3'- gCGuGCCGCU-------------UCaUGGUCGg----UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 7747 0.68 0.569359
Target:  5'- aGCGCcuggcgguccuccagGGCGGAGU-CCAGuCCugGugCg -3'
miRNA:   3'- gCGUG---------------CCGCUUCAuGGUC-GGugUugG- -5'
23087 5' -54.3 NC_005178.1 + 7831 0.68 0.542679
Target:  5'- aCGCGaaccucacaacCGGCGAGGU-CCAGUggCGCAuCCg -3'
miRNA:   3'- -GCGU-----------GCCGCUUCAuGGUCG--GUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 8606 0.74 0.252925
Target:  5'- gCGCACGGCGAuggccGUGCCGGaCGCGGg- -3'
miRNA:   3'- -GCGUGCCGCUu----CAUGGUCgGUGUUgg -5'
23087 5' -54.3 NC_005178.1 + 8658 0.66 0.689099
Target:  5'- uCGUA-GGCcugc--CCAGCCGCGACCa -3'
miRNA:   3'- -GCGUgCCGcuucauGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 8829 0.68 0.569359
Target:  5'- uCGCcCGGCGc-GUGCCGggugugagccccgacGCCAcCGACCg -3'
miRNA:   3'- -GCGuGCCGCuuCAUGGU---------------CGGU-GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 8974 0.69 0.499207
Target:  5'- gGgAUGGCGggGaaUGCCGGCgACGcCCc -3'
miRNA:   3'- gCgUGCCGCuuC--AUGGUCGgUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 9007 0.68 0.564887
Target:  5'- gGCGCGGCGGAcGgcccccgcCCAGUCAUGuagcGCCg -3'
miRNA:   3'- gCGUGCCGCUU-Cau------GGUCGGUGU----UGG- -5'
23087 5' -54.3 NC_005178.1 + 9092 0.72 0.335932
Target:  5'- uGCAUGGCGGAugccgACCGGaUUACGACCu -3'
miRNA:   3'- gCGUGCCGCUUca---UGGUC-GGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 9207 0.68 0.55375
Target:  5'- uGCugGugauCGAAGacaACCAGCCACucccGCCa -3'
miRNA:   3'- gCGugCc---GCUUCa--UGGUCGGUGu---UGG- -5'
23087 5' -54.3 NC_005178.1 + 9336 0.66 0.677869
Target:  5'- uGCGCcuGCGAcgAGUGCCuGgCACGGCg -3'
miRNA:   3'- gCGUGc-CGCU--UCAUGGuCgGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 9517 0.66 0.666593
Target:  5'- gGUGCGGaCGAAGUcauCCAGCga-GGCCu -3'
miRNA:   3'- gCGUGCC-GCUUCAu--GGUCGgugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 10258 0.67 0.598611
Target:  5'- aCGCAuCGGCc---UGCCGGCCACG-CUg -3'
miRNA:   3'- -GCGU-GCCGcuucAUGGUCGGUGUuGG- -5'
23087 5' -54.3 NC_005178.1 + 10410 0.73 0.303618
Target:  5'- aGCgGCGGCGAuauuuuCCGGCCGCAGgCg -3'
miRNA:   3'- gCG-UGCCGCUucau--GGUCGGUGUUgG- -5'
23087 5' -54.3 NC_005178.1 + 11185 0.77 0.158531
Target:  5'- gGuCGCGGUGAuuuccgacAGUACC-GCCACGGCCu -3'
miRNA:   3'- gC-GUGCCGCU--------UCAUGGuCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 11683 0.73 0.286146
Target:  5'- cCGCAuggccUGGCGGuacugaccugccgaAaUGCCGGCCACGGCCa -3'
miRNA:   3'- -GCGU-----GCCGCU--------------UcAUGGUCGGUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.