Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23088 | 3' | -58.5 | NC_005178.1 | + | 34871 | 0.66 | 0.4388 |
Target: 5'- uCGGCAGGGCcgaaacguGGUAcucauauccaccaccGCGCC-CGGAGuGCu -3' miRNA: 3'- -GUCGUUCCG--------CCAU---------------CGCGGcGCUUC-CG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 21785 | 0.66 | 0.434883 |
Target: 5'- cCAGCcAGGCG-----GCgGCGAAGGCa -3' miRNA: 3'- -GUCGuUCCGCcaucgCGgCGCUUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 36748 | 0.66 | 0.425181 |
Target: 5'- -cGCAggAGGuCGGaacGCGCauCGCGGAGGUg -3' miRNA: 3'- guCGU--UCC-GCCau-CGCG--GCGCUUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 6412 | 0.66 | 0.415609 |
Target: 5'- gCGGCGAGGC----GCGCCGCGAu--- -3' miRNA: 3'- -GUCGUUCCGccauCGCGGCGCUuccg -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 31516 | 0.66 | 0.415609 |
Target: 5'- -cGCGAcGGCGGUcuGGCgauGCUGCGc-GGCg -3' miRNA: 3'- guCGUU-CCGCCA--UCG---CGGCGCuuCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 16741 | 0.66 | 0.415609 |
Target: 5'- -uGCAuGGCcg-AGCaaaCCGCGAGGGCg -3' miRNA: 3'- guCGUuCCGccaUCGc--GGCGCUUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 30262 | 0.66 | 0.415609 |
Target: 5'- gCAGCcGGGCG---GCGUCGuUGAAGGUg -3' miRNA: 3'- -GUCGuUCCGCcauCGCGGC-GCUUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 32748 | 0.66 | 0.415609 |
Target: 5'- gUAGUAGGcGCGGcGGCGauugGCGAuccAGGCg -3' miRNA: 3'- -GUCGUUC-CGCCaUCGCgg--CGCU---UCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 8119 | 0.66 | 0.40617 |
Target: 5'- cCAGUucGGUGaccaGGUGCC-CGAGGGCg -3' miRNA: 3'- -GUCGuuCCGCca--UCGCGGcGCUUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 9564 | 0.66 | 0.396867 |
Target: 5'- -cGCGAGcGCGaugcccuGCGCCGCGcugcgcuGGGCg -3' miRNA: 3'- guCGUUC-CGCcau----CGCGGCGCu------UCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 9981 | 0.67 | 0.387702 |
Target: 5'- cCGGCAAGGcCGGgcgacgccaaaAGUGCCGCaaaaccGGCa -3' miRNA: 3'- -GUCGUUCC-GCCa----------UCGCGGCGcuu---CCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 12651 | 0.67 | 0.369795 |
Target: 5'- aCGGCucGGCGGccGGCGCgcugGCGGGuGGCc -3' miRNA: 3'- -GUCGuuCCGCCa-UCGCGg---CGCUU-CCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 23222 | 0.67 | 0.361056 |
Target: 5'- aGGUcAGGaCGGUGcGgGCCGUgucGAAGGCc -3' miRNA: 3'- gUCGuUCC-GCCAU-CgCGGCG---CUUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 11142 | 0.67 | 0.361056 |
Target: 5'- uCAGCGcGGGCGcccUGGcCGCCGCccuGGGCu -3' miRNA: 3'- -GUCGU-UCCGCc--AUC-GCGGCGcu-UCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 25964 | 0.67 | 0.355882 |
Target: 5'- cCAGCAAGGCGGgcagaucaaggacagUuucgguGGCGUcggCGCGAcguuucAGGCg -3' miRNA: 3'- -GUCGUUCCGCC---------------A------UCGCG---GCGCU------UCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 17327 | 0.67 | 0.35161 |
Target: 5'- aCGGCGGGGCcgaGGUcgcccagcucggcAGC-CCGCGccGGCu -3' miRNA: 3'- -GUCGUUCCG---CCA-------------UCGcGGCGCuuCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 23701 | 0.67 | 0.344013 |
Target: 5'- cCGGCAAGcCGGUGGCGCaggGCGAcgAGa- -3' miRNA: 3'- -GUCGUUCcGCCAUCGCGg--CGCU--UCcg -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 3570 | 0.68 | 0.33489 |
Target: 5'- -cGaCGAGGCGGUcGGCcuuauggGCCGCcuGGGCa -3' miRNA: 3'- guC-GUUCCGCCA-UCG-------CGGCGcuUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 24779 | 0.68 | 0.319551 |
Target: 5'- cCGGuCGAGGaCGuaGGCGCgGCGcAGGGCg -3' miRNA: 3'- -GUC-GUUCC-GCcaUCGCGgCGC-UUCCG- -5' |
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23088 | 3' | -58.5 | NC_005178.1 | + | 3217 | 0.68 | 0.319551 |
Target: 5'- -cGCAAGGuCGGcaacgucaGCCGCGAggucGGGCg -3' miRNA: 3'- guCGUUCC-GCCaucg----CGGCGCU----UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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