miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23088 3' -58.5 NC_005178.1 + 34871 0.66 0.4388
Target:  5'- uCGGCAGGGCcgaaacguGGUAcucauauccaccaccGCGCC-CGGAGuGCu -3'
miRNA:   3'- -GUCGUUCCG--------CCAU---------------CGCGGcGCUUC-CG- -5'
23088 3' -58.5 NC_005178.1 + 21785 0.66 0.434883
Target:  5'- cCAGCcAGGCG-----GCgGCGAAGGCa -3'
miRNA:   3'- -GUCGuUCCGCcaucgCGgCGCUUCCG- -5'
23088 3' -58.5 NC_005178.1 + 36748 0.66 0.425181
Target:  5'- -cGCAggAGGuCGGaacGCGCauCGCGGAGGUg -3'
miRNA:   3'- guCGU--UCC-GCCau-CGCG--GCGCUUCCG- -5'
23088 3' -58.5 NC_005178.1 + 6412 0.66 0.415609
Target:  5'- gCGGCGAGGC----GCGCCGCGAu--- -3'
miRNA:   3'- -GUCGUUCCGccauCGCGGCGCUuccg -5'
23088 3' -58.5 NC_005178.1 + 31516 0.66 0.415609
Target:  5'- -cGCGAcGGCGGUcuGGCgauGCUGCGc-GGCg -3'
miRNA:   3'- guCGUU-CCGCCA--UCG---CGGCGCuuCCG- -5'
23088 3' -58.5 NC_005178.1 + 16741 0.66 0.415609
Target:  5'- -uGCAuGGCcg-AGCaaaCCGCGAGGGCg -3'
miRNA:   3'- guCGUuCCGccaUCGc--GGCGCUUCCG- -5'
23088 3' -58.5 NC_005178.1 + 30262 0.66 0.415609
Target:  5'- gCAGCcGGGCG---GCGUCGuUGAAGGUg -3'
miRNA:   3'- -GUCGuUCCGCcauCGCGGC-GCUUCCG- -5'
23088 3' -58.5 NC_005178.1 + 32748 0.66 0.415609
Target:  5'- gUAGUAGGcGCGGcGGCGauugGCGAuccAGGCg -3'
miRNA:   3'- -GUCGUUC-CGCCaUCGCgg--CGCU---UCCG- -5'
23088 3' -58.5 NC_005178.1 + 8119 0.66 0.40617
Target:  5'- cCAGUucGGUGaccaGGUGCC-CGAGGGCg -3'
miRNA:   3'- -GUCGuuCCGCca--UCGCGGcGCUUCCG- -5'
23088 3' -58.5 NC_005178.1 + 9564 0.66 0.396867
Target:  5'- -cGCGAGcGCGaugcccuGCGCCGCGcugcgcuGGGCg -3'
miRNA:   3'- guCGUUC-CGCcau----CGCGGCGCu------UCCG- -5'
23088 3' -58.5 NC_005178.1 + 9981 0.67 0.387702
Target:  5'- cCGGCAAGGcCGGgcgacgccaaaAGUGCCGCaaaaccGGCa -3'
miRNA:   3'- -GUCGUUCC-GCCa----------UCGCGGCGcuu---CCG- -5'
23088 3' -58.5 NC_005178.1 + 12651 0.67 0.369795
Target:  5'- aCGGCucGGCGGccGGCGCgcugGCGGGuGGCc -3'
miRNA:   3'- -GUCGuuCCGCCa-UCGCGg---CGCUU-CCG- -5'
23088 3' -58.5 NC_005178.1 + 23222 0.67 0.361056
Target:  5'- aGGUcAGGaCGGUGcGgGCCGUgucGAAGGCc -3'
miRNA:   3'- gUCGuUCC-GCCAU-CgCGGCG---CUUCCG- -5'
23088 3' -58.5 NC_005178.1 + 11142 0.67 0.361056
Target:  5'- uCAGCGcGGGCGcccUGGcCGCCGCccuGGGCu -3'
miRNA:   3'- -GUCGU-UCCGCc--AUC-GCGGCGcu-UCCG- -5'
23088 3' -58.5 NC_005178.1 + 25964 0.67 0.355882
Target:  5'- cCAGCAAGGCGGgcagaucaaggacagUuucgguGGCGUcggCGCGAcguuucAGGCg -3'
miRNA:   3'- -GUCGUUCCGCC---------------A------UCGCG---GCGCU------UCCG- -5'
23088 3' -58.5 NC_005178.1 + 17327 0.67 0.35161
Target:  5'- aCGGCGGGGCcgaGGUcgcccagcucggcAGC-CCGCGccGGCu -3'
miRNA:   3'- -GUCGUUCCG---CCA-------------UCGcGGCGCuuCCG- -5'
23088 3' -58.5 NC_005178.1 + 23701 0.67 0.344013
Target:  5'- cCGGCAAGcCGGUGGCGCaggGCGAcgAGa- -3'
miRNA:   3'- -GUCGUUCcGCCAUCGCGg--CGCU--UCcg -5'
23088 3' -58.5 NC_005178.1 + 3570 0.68 0.33489
Target:  5'- -cGaCGAGGCGGUcGGCcuuauggGCCGCcuGGGCa -3'
miRNA:   3'- guC-GUUCCGCCA-UCG-------CGGCGcuUCCG- -5'
23088 3' -58.5 NC_005178.1 + 24779 0.68 0.319551
Target:  5'- cCGGuCGAGGaCGuaGGCGCgGCGcAGGGCg -3'
miRNA:   3'- -GUC-GUUCC-GCcaUCGCGgCGC-UUCCG- -5'
23088 3' -58.5 NC_005178.1 + 3217 0.68 0.319551
Target:  5'- -cGCAAGGuCGGcaacgucaGCCGCGAggucGGGCg -3'
miRNA:   3'- guCGUUCC-GCCaucg----CGGCGCU----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.