miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 10365 0.66 0.646082
Target:  5'- uGGCCgagcuggugGGcAGCGAcAUCGAggagCAGCU-CCa -3'
miRNA:   3'- -CCGGa--------CC-UCGCU-UGGCUa---GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 10458 0.7 0.430066
Target:  5'- cGCCUGGAucGCGGcaaugcuCCGGUCcAGCUcCCu -3'
miRNA:   3'- cCGGACCU--CGCUu------GGCUAG-UCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 10592 0.7 0.38261
Target:  5'- cGGCC--GAGCGAGCCGGcaccgCAGCaauCCa -3'
miRNA:   3'- -CCGGacCUCGCUUGGCUa----GUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 11987 0.72 0.306404
Target:  5'- -cCCUGGuGCGGGCUGGUaccgGGCUGCUg -3'
miRNA:   3'- ccGGACCuCGCUUGGCUAg---UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 12086 0.69 0.457088
Target:  5'- cGCCUGGuggaguggucgcguGGCGGgccugGCCGAUgGGCgcGCCg -3'
miRNA:   3'- cCGGACC--------------UCGCU-----UGGCUAgUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 12231 0.81 0.078107
Target:  5'- cGCCUGGccaAGCGGGCCGA-CAGCgACCa -3'
miRNA:   3'- cCGGACC---UCGCUUGGCUaGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 12596 0.75 0.205607
Target:  5'- cGCCUGGAGCGcuucgagGACCGAUUcccgcagaucgAGCguaagGCCg -3'
miRNA:   3'- cCGGACCUCGC-------UUGGCUAG-----------UCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 12807 0.66 0.668604
Target:  5'- gGGCCgcgugGuGGGUGAGCUgcucuucgaaGGUCAGCUcgcggacaACCa -3'
miRNA:   3'- -CCGGa----C-CUCGCUUGG----------CUAGUCGA--------UGG- -5'
23093 3' -54.8 NC_005178.1 + 13072 0.76 0.174738
Target:  5'- -uCCUGGAGCGggUCGGUC-GCgACCu -3'
miRNA:   3'- ccGGACCUCGCuuGGCUAGuCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 14021 0.71 0.338769
Target:  5'- gGGCCagcGGAGUGAcgccCUGAUCAGgaACCc -3'
miRNA:   3'- -CCGGa--CCUCGCUu---GGCUAGUCgaUGG- -5'
23093 3' -54.8 NC_005178.1 + 14064 0.67 0.589727
Target:  5'- uGCCUuGAGCagccGGCCGAgCAGCggGCCg -3'
miRNA:   3'- cCGGAcCUCGc---UUGGCUaGUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 14450 0.66 0.623506
Target:  5'- cGCC-GGGGUgccgGAGCUGGUCAGg-GCCa -3'
miRNA:   3'- cCGGaCCUCG----CUUGGCUAGUCgaUGG- -5'
23093 3' -54.8 NC_005178.1 + 15699 0.73 0.27646
Target:  5'- cGGCCUGGAcUGGACC-AUCgAGCcGCCg -3'
miRNA:   3'- -CCGGACCUcGCUUGGcUAG-UCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 15958 0.69 0.460147
Target:  5'- cGCCUGGGGCGGuagauGCCGAUuUGGUcguCCu -3'
miRNA:   3'- cCGGACCUCGCU-----UGGCUA-GUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 16334 0.68 0.523408
Target:  5'- cGGCCggGGAGCGggUU--UCGG-UGCCg -3'
miRNA:   3'- -CCGGa-CCUCGCuuGGcuAGUCgAUGG- -5'
23093 3' -54.8 NC_005178.1 + 17292 0.66 0.613352
Target:  5'- aGGCUggugGGGGCGucagauagugguugcGCCGGaCGGCgggGCCg -3'
miRNA:   3'- -CCGGa---CCUCGCu--------------UGGCUaGUCGa--UGG- -5'
23093 3' -54.8 NC_005178.1 + 17726 0.66 0.623506
Target:  5'- -cCCUGGAGaCGAccgaccggGCCGGUCGGaagauCCa -3'
miRNA:   3'- ccGGACCUC-GCU--------UGGCUAGUCgau--GG- -5'
23093 3' -54.8 NC_005178.1 + 19549 0.66 0.646082
Target:  5'- aGCCUGGAGCuGGGCacccUgGGCaGCCg -3'
miRNA:   3'- cCGGACCUCG-CUUGgcu-AgUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 20230 0.7 0.430066
Target:  5'- cGGUCUGGAGCcucucgcacGCCGAgCGGCcgcgACCu -3'
miRNA:   3'- -CCGGACCUCGcu-------UGGCUaGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 20528 0.66 0.62012
Target:  5'- cGGCCUcGGuuGGCGuugccaucagucgauCCGAUCcAGCgUGCCg -3'
miRNA:   3'- -CCGGA-CC--UCGCuu-------------GGCUAG-UCG-AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.