miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 829 0.73 0.27646
Target:  5'- cGGCaugaaaUGGAGCGAuCCGGuuUCAGCgcgcACCc -3'
miRNA:   3'- -CCGg-----ACCUCGCUuGGCU--AGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 1837 0.68 0.53429
Target:  5'- cGuCCUGGAGCGGACC-AUCcGCcauguccucgGCCa -3'
miRNA:   3'- cC-GGACCUCGCUUGGcUAGuCGa---------UGG- -5'
23093 3' -54.8 NC_005178.1 + 1938 0.7 0.410667
Target:  5'- -aCCUGGAGCGucACCGucgcccCAGCUuCCg -3'
miRNA:   3'- ccGGACCUCGCu-UGGCua----GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 2196 0.7 0.39182
Target:  5'- gGGCCUGGAGCGucacGCCc--UGGCUguagACCg -3'
miRNA:   3'- -CCGGACCUCGCu---UGGcuaGUCGA----UGG- -5'
23093 3' -54.8 NC_005178.1 + 2612 0.66 0.623506
Target:  5'- aGGagCUGGAGauuugcCGGAUCGAUCAcGCcgGCCa -3'
miRNA:   3'- -CCg-GACCUC------GCUUGGCUAGU-CGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 2920 0.68 0.50191
Target:  5'- cGGCCaGGu-CGAGCCG--CAGCUGCUc -3'
miRNA:   3'- -CCGGaCCucGCUUGGCuaGUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 3010 0.71 0.338769
Target:  5'- aGCCUGGAGCGcuuccuggaccaGGCCGAgcgUGGC-GCCc -3'
miRNA:   3'- cCGGACCUCGC------------UUGGCUa--GUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 4974 0.74 0.242374
Target:  5'- cGGCCggugcGGugauGCGAACUGGUCGGaCUGCg -3'
miRNA:   3'- -CCGGa----CCu---CGCUUGGCUAGUC-GAUGg -5'
23093 3' -54.8 NC_005178.1 + 5261 0.66 0.646082
Target:  5'- -aCCUGGAGCaguuGGCCGA--GGCcGCCa -3'
miRNA:   3'- ccGGACCUCGc---UUGGCUagUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 5876 0.66 0.612225
Target:  5'- aGCCgGGucAGCGuaggcuguUCGGUCAGCUGCg -3'
miRNA:   3'- cCGGaCC--UCGCuu------GGCUAGUCGAUGg -5'
23093 3' -54.8 NC_005178.1 + 5949 0.72 0.298691
Target:  5'- uGGCCUGGAcgggGCGGACCaGGUCcaGGCcggcggcgguacUGCCu -3'
miRNA:   3'- -CCGGACCU----CGCUUGG-CUAG--UCG------------AUGG- -5'
23093 3' -54.8 NC_005178.1 + 6879 0.79 0.117144
Target:  5'- cGGCCUGGGGCGAGCguccgcccgucuuCGucCAGCUGCUc -3'
miRNA:   3'- -CCGGACCUCGCUUG-------------GCuaGUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 7340 0.68 0.491307
Target:  5'- cGCCUGGAGCcGACaGAggGGCgcgugACCa -3'
miRNA:   3'- cCGGACCUCGcUUGgCUagUCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 7482 1.15 0.000287
Target:  5'- uGGCCUGGAGCGAACCGAUCAGCUACCg -3'
miRNA:   3'- -CCGGACCUCGCUUGGCUAGUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 7903 0.67 0.556282
Target:  5'- cGGuCCUGGAGCu-ACUGcgCAGCaagggGCUa -3'
miRNA:   3'- -CC-GGACCUCGcuUGGCuaGUCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 9324 0.73 0.28372
Target:  5'- cGGCCUGGAuaGCGGcggcGCCGcUCAGgaGCg -3'
miRNA:   3'- -CCGGACCU--CGCU----UGGCuAGUCgaUGg -5'
23093 3' -54.8 NC_005178.1 + 9693 0.69 0.439966
Target:  5'- cGGCCUGGAggucgGCGuAGuuGcguugCAGCUGCUg -3'
miRNA:   3'- -CCGGACCU-----CGC-UUggCua---GUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 9830 0.72 0.306404
Target:  5'- aGGCgCUGcugcGCGAAUCGGUCgucaaGGCUGCCa -3'
miRNA:   3'- -CCG-GACcu--CGCUUGGCUAG-----UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 10263 0.68 0.50191
Target:  5'- cGCCUGGAGCuu-CUGcUCGGCguuCCu -3'
miRNA:   3'- cCGGACCUCGcuuGGCuAGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 10327 0.67 0.556282
Target:  5'- gGGCCgggcgcggaGGGGCGAAgCGcgCcgGGCUGCg -3'
miRNA:   3'- -CCGGa--------CCUCGCUUgGCuaG--UCGAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.