Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23093 | 3' | -54.8 | NC_005178.1 | + | 37187 | 0.68 | 0.533198 |
Target: 5'- cGCCUGGAGgcCGAguuugacGCC-AUC-GCUACCg -3' miRNA: 3'- cCGGACCUC--GCU-------UGGcUAGuCGAUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 20230 | 0.7 | 0.430066 |
Target: 5'- cGGUCUGGAGCcucucgcacGCCGAgCGGCcgcgACCu -3' miRNA: 3'- -CCGGACCUCGcu-------UGGCUaGUCGa---UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 12086 | 0.69 | 0.457088 |
Target: 5'- cGCCUGGuggaguggucgcguGGCGGgccugGCCGAUgGGCgcGCCg -3' miRNA: 3'- cCGGACC--------------UCGCU-----UGGCUAgUCGa-UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 26072 | 0.69 | 0.460147 |
Target: 5'- cGGCCUGGA-CGAcaucgcCCGAggggCGgacGCUGCCg -3' miRNA: 3'- -CCGGACCUcGCUu-----GGCUa---GU---CGAUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 31940 | 0.69 | 0.460147 |
Target: 5'- cGGCaUGGGcCGAGCCGAgcggUCGGCguuCCg -3' miRNA: 3'- -CCGgACCUcGCUUGGCU----AGUCGau-GG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 7340 | 0.68 | 0.491307 |
Target: 5'- cGCCUGGAGCcGACaGAggGGCgcgugACCa -3' miRNA: 3'- cCGGACCUCGcUUGgCUagUCGa----UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 2920 | 0.68 | 0.50191 |
Target: 5'- cGGCCaGGu-CGAGCCG--CAGCUGCUc -3' miRNA: 3'- -CCGGaCCucGCUUGGCuaGUCGAUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 24170 | 0.68 | 0.523408 |
Target: 5'- -aCCUGGuggcuGGCGAugUGAUCcGCUugGCCa -3' miRNA: 3'- ccGGACC-----UCGCUugGCUAGuCGA--UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 28432 | 0.68 | 0.531017 |
Target: 5'- cGGCCUGGcuauccaacaaugaGGuCGuaauCCGGUCGGCauccGCCa -3' miRNA: 3'- -CCGGACC--------------UC-GCuu--GGCUAGUCGa---UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 28990 | 0.7 | 0.401173 |
Target: 5'- uGGCCUGG-GCGGcACCGAUagCAuCUACa -3' miRNA: 3'- -CCGGACCuCGCU-UGGCUA--GUcGAUGg -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 36041 | 0.7 | 0.39182 |
Target: 5'- gGGCC-GGGGCGAACCaGAaCcGCUugGCCc -3' miRNA: 3'- -CCGGaCCUCGCUUGG-CUaGuCGA--UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 10592 | 0.7 | 0.38261 |
Target: 5'- cGGCC--GAGCGAGCCGGcaccgCAGCaauCCa -3' miRNA: 3'- -CCGGacCUCGCUUGGCUa----GUCGau-GG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 12231 | 0.81 | 0.078107 |
Target: 5'- cGCCUGGccaAGCGGGCCGA-CAGCgACCa -3' miRNA: 3'- cCGGACC---UCGCUUGGCUaGUCGaUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 6879 | 0.79 | 0.117144 |
Target: 5'- cGGCCUGGGGCGAGCguccgcccgucuuCGucCAGCUGCUc -3' miRNA: 3'- -CCGGACCUCGCUUG-------------GCuaGUCGAUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 12596 | 0.75 | 0.205607 |
Target: 5'- cGCCUGGAGCGcuucgagGACCGAUUcccgcagaucgAGCguaagGCCg -3' miRNA: 3'- cCGGACCUCGC-------UUGGCUAG-----------UCGa----UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 28121 | 0.74 | 0.235992 |
Target: 5'- uGGCCUGG-GCGGuggcACCGAUggCGGCgcCCa -3' miRNA: 3'- -CCGGACCuCGCU----UGGCUA--GUCGauGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 15699 | 0.73 | 0.27646 |
Target: 5'- cGGCCUGGAcUGGACC-AUCgAGCcGCCg -3' miRNA: 3'- -CCGGACCUcGCUUGGcUAG-UCGaUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 11987 | 0.72 | 0.306404 |
Target: 5'- -cCCUGGuGCGGGCUGGUaccgGGCUGCUg -3' miRNA: 3'- ccGGACCuCGCUUGGCUAg---UCGAUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 3010 | 0.71 | 0.338769 |
Target: 5'- aGCCUGGAGCGcuuccuggaccaGGCCGAgcgUGGC-GCCc -3' miRNA: 3'- cCGGACCUCGC------------UUGGCUa--GUCGaUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 33908 | 0.71 | 0.347238 |
Target: 5'- cGCCUGGcGGCGAugC--UCGGCgGCCg -3' miRNA: 3'- cCGGACC-UCGCUugGcuAGUCGaUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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