miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 7482 1.15 0.000287
Target:  5'- uGGCCUGGAGCGAACCGAUCAGCUACCg -3'
miRNA:   3'- -CCGGACCUCGCUUGGCUAGUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 12231 0.81 0.078107
Target:  5'- cGCCUGGccaAGCGGGCCGA-CAGCgACCa -3'
miRNA:   3'- cCGGACC---UCGCUUGGCUaGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 6879 0.79 0.117144
Target:  5'- cGGCCUGGGGCGAGCguccgcccgucuuCGucCAGCUGCUc -3'
miRNA:   3'- -CCGGACCUCGCUUG-------------GCuaGUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 13072 0.76 0.174738
Target:  5'- -uCCUGGAGCGggUCGGUC-GCgACCu -3'
miRNA:   3'- ccGGACCUCGCuuGGCUAGuCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 12596 0.75 0.205607
Target:  5'- cGCCUGGAGCGcuucgagGACCGAUUcccgcagaucgAGCguaagGCCg -3'
miRNA:   3'- cCGGACCUCGC-------UUGGCUAG-----------UCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 28121 0.74 0.235992
Target:  5'- uGGCCUGG-GCGGuggcACCGAUggCGGCgcCCa -3'
miRNA:   3'- -CCGGACCuCGCU----UGGCUA--GUCGauGG- -5'
23093 3' -54.8 NC_005178.1 + 4974 0.74 0.242374
Target:  5'- cGGCCggugcGGugauGCGAACUGGUCGGaCUGCg -3'
miRNA:   3'- -CCGGa----CCu---CGCUUGGCUAGUC-GAUGg -5'
23093 3' -54.8 NC_005178.1 + 829 0.73 0.27646
Target:  5'- cGGCaugaaaUGGAGCGAuCCGGuuUCAGCgcgcACCc -3'
miRNA:   3'- -CCGg-----ACCUCGCUuGGCU--AGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 15699 0.73 0.27646
Target:  5'- cGGCCUGGAcUGGACC-AUCgAGCcGCCg -3'
miRNA:   3'- -CCGGACCUcGCUUGGcUAG-UCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 33038 0.73 0.282987
Target:  5'- aGGCC-GGAGCGuuGCCGcUCGGCcagcucgcaccacUGCCg -3'
miRNA:   3'- -CCGGaCCUCGCu-UGGCuAGUCG-------------AUGG- -5'
23093 3' -54.8 NC_005178.1 + 9324 0.73 0.28372
Target:  5'- cGGCCUGGAuaGCGGcggcGCCGcUCAGgaGCg -3'
miRNA:   3'- -CCGGACCU--CGCU----UGGCuAGUCgaUGg -5'
23093 3' -54.8 NC_005178.1 + 5949 0.72 0.298691
Target:  5'- uGGCCUGGAcgggGCGGACCaGGUCcaGGCcggcggcgguacUGCCu -3'
miRNA:   3'- -CCGGACCU----CGCUUGG-CUAG--UCG------------AUGG- -5'
23093 3' -54.8 NC_005178.1 + 9830 0.72 0.306404
Target:  5'- aGGCgCUGcugcGCGAAUCGGUCgucaaGGCUGCCa -3'
miRNA:   3'- -CCG-GACcu--CGCUUGGCUAG-----UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 11987 0.72 0.306404
Target:  5'- -cCCUGGuGCGGGCUGGUaccgGGCUGCUg -3'
miRNA:   3'- ccGGACCuCGCUUGGCUAg---UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 3010 0.71 0.338769
Target:  5'- aGCCUGGAGCGcuuccuggaccaGGCCGAgcgUGGC-GCCc -3'
miRNA:   3'- cCGGACCUCGC------------UUGGCUa--GUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 14021 0.71 0.338769
Target:  5'- gGGCCagcGGAGUGAcgccCUGAUCAGgaACCc -3'
miRNA:   3'- -CCGGa--CCUCGCUu---GGCUAGUCgaUGG- -5'
23093 3' -54.8 NC_005178.1 + 33908 0.71 0.347238
Target:  5'- cGCCUGGcGGCGAugC--UCGGCgGCCg -3'
miRNA:   3'- cCGGACC-UCGCUugGcuAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 25678 0.71 0.373546
Target:  5'- cGGCCUGG-GCGAuCUGcUCGGC-GCUg -3'
miRNA:   3'- -CCGGACCuCGCUuGGCuAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 10592 0.7 0.38261
Target:  5'- cGGCC--GAGCGAGCCGGcaccgCAGCaauCCa -3'
miRNA:   3'- -CCGGacCUCGCUUGGCUa----GUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 36041 0.7 0.39182
Target:  5'- gGGCC-GGGGCGAACCaGAaCcGCUugGCCc -3'
miRNA:   3'- -CCGGaCCUCGCUUGG-CUaGuCGA--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.