miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23101 3' -58.4 NC_005178.1 + 10354 0.66 0.409711
Target:  5'- -cCGGGCuGCGCUgGCcgagcugGugGGcAGCGa -3'
miRNA:   3'- aaGCCCGuCGCGAgCG-------UugCCuUCGU- -5'
23101 3' -58.4 NC_005178.1 + 26094 0.66 0.39182
Target:  5'- --gGGGCGGaCGCUgcCGCAGCGucGGCc -3'
miRNA:   3'- aagCCCGUC-GCGA--GCGUUGCcuUCGu -5'
23101 3' -58.4 NC_005178.1 + 29903 0.66 0.373546
Target:  5'- -aCGGGCca-GCUCGCGcUGGAGGUc -3'
miRNA:   3'- aaGCCCGucgCGAGCGUuGCCUUCGu -5'
23101 3' -58.4 NC_005178.1 + 31311 0.67 0.347238
Target:  5'- -cCGGGCuaugcgccuGGCGC-CGCGcCGGGAGUu -3'
miRNA:   3'- aaGCCCG---------UCGCGaGCGUuGCCUUCGu -5'
23101 3' -58.4 NC_005178.1 + 16373 0.67 0.338769
Target:  5'- gUCGGGCGGCGg-CGCcuACGcccuGggGCAg -3'
miRNA:   3'- aAGCCCGUCGCgaGCGu-UGC----CuuCGU- -5'
23101 3' -58.4 NC_005178.1 + 34539 0.67 0.313474
Target:  5'- --gGGGCGGCGCUCGUcugaGGAaaucgaguuccugGGCGu -3'
miRNA:   3'- aagCCCGUCGCGAGCGuug-CCU-------------UCGU- -5'
23101 3' -58.4 NC_005178.1 + 23680 0.68 0.28372
Target:  5'- -cCGGGCGGCGCUgGCcuuCGGGucggGGUc -3'
miRNA:   3'- aaGCCCGUCGCGAgCGuu-GCCU----UCGu -5'
23101 3' -58.4 NC_005178.1 + 30491 0.69 0.262386
Target:  5'- gUUCGGcgcucaGCAGCGCUCGCGguAUGuGGGCGa -3'
miRNA:   3'- -AAGCC------CGUCGCGAGCGU--UGCcUUCGU- -5'
23101 3' -58.4 NC_005178.1 + 28526 0.69 0.248899
Target:  5'- -aUGGGCGGCGCUacaUGacugGGCGGggGCc -3'
miRNA:   3'- aaGCCCGUCGCGA---GCg---UUGCCuuCGu -5'
23101 3' -58.4 NC_005178.1 + 30405 0.69 0.241729
Target:  5'- uUUCcaGCAGCGCaUCGCGACGGGguuguucAGCGg -3'
miRNA:   3'- -AAGccCGUCGCG-AGCGUUGCCU-------UCGU- -5'
23101 3' -58.4 NC_005178.1 + 36027 0.72 0.165248
Target:  5'- -gCGGGCGGCGacCUCGUAACGGucaaggucGCAa -3'
miRNA:   3'- aaGCCCGUCGC--GAGCGUUGCCuu------CGU- -5'
23101 3' -58.4 NC_005178.1 + 34837 0.73 0.131771
Target:  5'- --aGGGCGGCGUUCaGCAGCGcGgcGCGg -3'
miRNA:   3'- aagCCCGUCGCGAG-CGUUGC-CuuCGU- -5'
23101 3' -58.4 NC_005178.1 + 11047 1.06 0.000402
Target:  5'- aUUCGGGCAGCGCUCGCAACGGAAGCAc -3'
miRNA:   3'- -AAGCCCGUCGCGAGCGUUGCCUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.