miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 5' -53 NC_005178.1 + 18331 0.66 0.753834
Target:  5'- gGAGCUGguggacCGCGAGGUCcaggagcgccuGGCGGCaCUcuacGCg -3'
miRNA:   3'- -CUUGAUa-----GCGUUCCAG-----------CUGCCG-GA----CG- -5'
23102 5' -53 NC_005178.1 + 12627 0.66 0.750591
Target:  5'- aGAuCgagCGUAAGGccgugcuguacggcUCGGCGGCCgGCg -3'
miRNA:   3'- -CUuGauaGCGUUCC--------------AGCUGCCGGaCG- -5'
23102 5' -53 NC_005178.1 + 22698 0.66 0.742979
Target:  5'- cGAGCUggAUCGCcGGGUCG-CuGCCgagUGCc -3'
miRNA:   3'- -CUUGA--UAGCGuUCCAGCuGcCGG---ACG- -5'
23102 5' -53 NC_005178.1 + 33554 0.66 0.70861
Target:  5'- cGGACggugCGCAgcaccugGGGUCGgaacaGCGGCCggGCc -3'
miRNA:   3'- -CUUGaua-GCGU-------UCCAGC-----UGCCGGa-CG- -5'
23102 5' -53 NC_005178.1 + 32093 0.67 0.687131
Target:  5'- cGGCUAugcccguuUCGCGAauGGUCGGCcgGGCCgucGCg -3'
miRNA:   3'- cUUGAU--------AGCGUU--CCAGCUG--CCGGa--CG- -5'
23102 5' -53 NC_005178.1 + 15217 0.67 0.675737
Target:  5'- -cACgc-CGgAAGGUCGGCGGauagCUGCg -3'
miRNA:   3'- cuUGauaGCgUUCCAGCUGCCg---GACG- -5'
23102 5' -53 NC_005178.1 + 9363 0.67 0.675737
Target:  5'- cAGCaGUCGcCAGGG-CGcCGGCCgagGCg -3'
miRNA:   3'- cUUGaUAGC-GUUCCaGCuGCCGGa--CG- -5'
23102 5' -53 NC_005178.1 + 12571 0.67 0.675737
Target:  5'- cGAACUGcUGCAAcGcaUCGACGGCC-GCc -3'
miRNA:   3'- -CUUGAUaGCGUUcC--AGCUGCCGGaCG- -5'
23102 5' -53 NC_005178.1 + 28964 0.67 0.641334
Target:  5'- cGAGCgcguggUGCAguugGGGcCGGCucGGCCUGCg -3'
miRNA:   3'- -CUUGaua---GCGU----UCCaGCUG--CCGGACG- -5'
23102 5' -53 NC_005178.1 + 22771 0.68 0.606847
Target:  5'- uGAGCUAUUGCAcccAGGcCGACcuGGUCgaGCa -3'
miRNA:   3'- -CUUGAUAGCGU---UCCaGCUG--CCGGa-CG- -5'
23102 5' -53 NC_005178.1 + 12672 0.68 0.595385
Target:  5'- uGGCggGUgGCcuGGUUGccuGCGGCCUGCu -3'
miRNA:   3'- cUUGa-UAgCGuuCCAGC---UGCCGGACG- -5'
23102 5' -53 NC_005178.1 + 12458 0.68 0.595385
Target:  5'- uAGCUGUCGCucGGUguaGCGGCCgaGCu -3'
miRNA:   3'- cUUGAUAGCGuuCCAgc-UGCCGGa-CG- -5'
23102 5' -53 NC_005178.1 + 24110 0.68 0.583956
Target:  5'- --uCUAUgGCAAGGUCGugaccaagGCGGCggGCu -3'
miRNA:   3'- cuuGAUAgCGUUCCAGC--------UGCCGgaCG- -5'
23102 5' -53 NC_005178.1 + 26051 0.69 0.561241
Target:  5'- ----gAUCGCGAGuaacgccagCGACGGCCUGg -3'
miRNA:   3'- cuugaUAGCGUUCca-------GCUGCCGGACg -5'
23102 5' -53 NC_005178.1 + 1993 0.69 0.561241
Target:  5'- -cGCUGcaGCAgAGGUCG-CGGCCUGg -3'
miRNA:   3'- cuUGAUagCGU-UCCAGCuGCCGGACg -5'
23102 5' -53 NC_005178.1 + 4901 0.7 0.515523
Target:  5'- -uGCaUGUCGUAgacgaccAGGUCGACGGCaCcGCu -3'
miRNA:   3'- cuUG-AUAGCGU-------UCCAGCUGCCG-GaCG- -5'
23102 5' -53 NC_005178.1 + 8586 0.7 0.480914
Target:  5'- gGGGCg--CGCAGGGUcaccuggcgcacggCGAUGGCCgUGCc -3'
miRNA:   3'- -CUUGauaGCGUUCCA--------------GCUGCCGG-ACG- -5'
23102 5' -53 NC_005178.1 + 21656 0.7 0.462993
Target:  5'- cAGCU-UUGCGGccgguGGUCGAaGGCCUGCg -3'
miRNA:   3'- cUUGAuAGCGUU-----CCAGCUgCCGGACG- -5'
23102 5' -53 NC_005178.1 + 9147 0.71 0.41243
Target:  5'- -uGCUGUCGCu-GGUCGGUGuGCCUGg -3'
miRNA:   3'- cuUGAUAGCGuuCCAGCUGC-CGGACg -5'
23102 5' -53 NC_005178.1 + 11850 0.73 0.329733
Target:  5'- cGAGCUucuccagcUCGCGagugaccGGGUCGAUGGCC-GCg -3'
miRNA:   3'- -CUUGAu-------AGCGU-------UCCAGCUGCCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.