miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23104 3' -59.5 NC_005178.1 + 5440 0.69 0.278053
Target:  5'- aGCAGAugugggaaguaaUCCGgGCCaACCGCGAagaGUUCa -3'
miRNA:   3'- -UGUCU------------GGGCgCGGaUGGCGCUg--CAGG- -5'
23104 3' -59.5 NC_005178.1 + 22873 0.68 0.31461
Target:  5'- aGCAGAUgaUCGCGCCguccuccaugGCgGCGGCGcgcUCCu -3'
miRNA:   3'- -UGUCUG--GGCGCGGa---------UGgCGCUGC---AGG- -5'
23104 3' -59.5 NC_005178.1 + 18186 0.68 0.322344
Target:  5'- aGCAG-CCCGCGCaggUAgCGCGG-GUCUg -3'
miRNA:   3'- -UGUCuGGGCGCGg--AUgGCGCUgCAGG- -5'
23104 3' -59.5 NC_005178.1 + 15069 0.68 0.330219
Target:  5'- gACGGcucACCCuCGCC-GCCGaCGuCGUCCg -3'
miRNA:   3'- -UGUC---UGGGcGCGGaUGGC-GCuGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 10734 0.66 0.39823
Target:  5'- gACAGcCCCGCugGCC-ACaGCG-CGUCCc -3'
miRNA:   3'- -UGUCuGGGCG--CGGaUGgCGCuGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 24728 0.66 0.39823
Target:  5'- aGCGGugCCauaggagaCGCCgaacauggcgGCCGCGACcUCCa -3'
miRNA:   3'- -UGUCugGGc-------GCGGa---------UGGCGCUGcAGG- -5'
23104 3' -59.5 NC_005178.1 + 14086 0.66 0.415652
Target:  5'- aGCGGGCCggcuuCGCGCCgggcgcccugGCCGUcgcccugGGCGUCg -3'
miRNA:   3'- -UGUCUGG-----GCGCGGa---------UGGCG-------CUGCAGg -5'
23104 3' -59.5 NC_005178.1 + 34576 0.68 0.307018
Target:  5'- gGCAGGCcauCCGCGCUcgggcgGCCGCGAgGaUCg -3'
miRNA:   3'- -UGUCUG---GGCGCGGa-----UGGCGCUgC-AGg -5'
23104 3' -59.5 NC_005178.1 + 24610 0.68 0.307018
Target:  5'- cCAGGCCgGCcagcaCCUGgCGCGccACGUCCu -3'
miRNA:   3'- uGUCUGGgCGc----GGAUgGCGC--UGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 9602 0.68 0.292255
Target:  5'- aACAG-UUCGUagGUCUGgcCCGCGACGUCCc -3'
miRNA:   3'- -UGUCuGGGCG--CGGAU--GGCGCUGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 1810 0.69 0.251309
Target:  5'- cGCGGACaCUGCGCaggACaagGCGcACGUCCu -3'
miRNA:   3'- -UGUCUG-GGCGCGga-UGg--CGC-UGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 4042 0.7 0.243085
Target:  5'- -aAGAacuCCCGCGCCUGCCggugGCaguagcccugucgaGugGUCCa -3'
miRNA:   3'- ugUCU---GGGCGCGGAUGG----CG--------------CugCAGG- -5'
23104 3' -59.5 NC_005178.1 + 8660 0.71 0.193685
Target:  5'- gUAGGCCUGC-CCaGCCGCGACcagGUCUg -3'
miRNA:   3'- uGUCUGGGCGcGGaUGGCGCUG---CAGG- -5'
23104 3' -59.5 NC_005178.1 + 30241 0.71 0.183646
Target:  5'- gGCGGACCCccauGCGCUggagcaGCCggGCGGCGUCg -3'
miRNA:   3'- -UGUCUGGG----CGCGGa-----UGG--CGCUGCAGg -5'
23104 3' -59.5 NC_005178.1 + 32397 0.75 0.106188
Target:  5'- gUAGACCgGCGCCagGuuGCGgGCGUCCu -3'
miRNA:   3'- uGUCUGGgCGCGGa-UggCGC-UGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 2380 0.66 0.416582
Target:  5'- uGCGG-CCUG-GCCgACaGUGACGUCCu -3'
miRNA:   3'- -UGUCuGGGCgCGGaUGgCGCUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.