miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23104 3' -59.5 NC_005178.1 + 31311 0.66 0.425949
Target:  5'- cCGGGCUaUGCGCCUGgCGCcGCG-CCg -3'
miRNA:   3'- uGUCUGG-GCGCGGAUgGCGcUGCaGG- -5'
23104 3' -59.5 NC_005178.1 + 12302 0.68 0.307018
Target:  5'- uGguGAUCgCGCuGCCUGCCGCuuuccugcuGGCGUCa -3'
miRNA:   3'- -UguCUGG-GCG-CGGAUGGCG---------CUGCAGg -5'
23104 3' -59.5 NC_005178.1 + 30818 0.68 0.322344
Target:  5'- -uGGGCCgGCGUCUA-CGCGGCGcaucagCCg -3'
miRNA:   3'- ugUCUGGgCGCGGAUgGCGCUGCa-----GG- -5'
23104 3' -59.5 NC_005178.1 + 12673 0.67 0.338234
Target:  5'- gGCGGguggccugguuGCCUGCgGCCUGCuCGCGGCG-Cg -3'
miRNA:   3'- -UGUC-----------UGGGCG-CGGAUG-GCGCUGCaGg -5'
23104 3' -59.5 NC_005178.1 + 31740 0.67 0.353851
Target:  5'- aAUGGAgCCCaGCGCCUggcccgagguaauGCCGgCGACGaCCu -3'
miRNA:   3'- -UGUCU-GGG-CGCGGA-------------UGGC-GCUGCaGG- -5'
23104 3' -59.5 NC_005178.1 + 5540 0.67 0.354686
Target:  5'- cGCcuGCCUGCGCCUggGCgGCuACGUCg -3'
miRNA:   3'- -UGucUGGGCGCGGA--UGgCGcUGCAGg -5'
23104 3' -59.5 NC_005178.1 + 9518 0.67 0.363122
Target:  5'- gACAGACCgccagCGcCGCCUGgCGCGggaACG-CCa -3'
miRNA:   3'- -UGUCUGG-----GC-GCGGAUgGCGC---UGCaGG- -5'
23104 3' -59.5 NC_005178.1 + 35734 0.66 0.399135
Target:  5'- -aGGACgUGCGCCUuguccugcgcaguguCCGCGACGg-- -3'
miRNA:   3'- ugUCUGgGCGCGGAu--------------GGCGCUGCagg -5'
23104 3' -59.5 NC_005178.1 + 25892 0.66 0.425949
Target:  5'- gGCAGuuGCCgGCGCagaucACCGaCGugGUCa -3'
miRNA:   3'- -UGUC--UGGgCGCGga---UGGC-GCugCAGg -5'
23104 3' -59.5 NC_005178.1 + 12754 0.68 0.292255
Target:  5'- -aGGAaaCCCGCGacgcCCUgcGCCGCGccuACGUCCu -3'
miRNA:   3'- ugUCU--GGGCGC----GGA--UGGCGC---UGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 20018 0.69 0.278053
Target:  5'- aACGGccaGCCCGCGCCcGCUGcCGGCcguuUCCu -3'
miRNA:   3'- -UGUC---UGGGCGCGGaUGGC-GCUGc---AGG- -5'
23104 3' -59.5 NC_005178.1 + 5440 0.69 0.278053
Target:  5'- aGCAGAugugggaaguaaUCCGgGCCaACCGCGAagaGUUCa -3'
miRNA:   3'- -UGUCU------------GGGCgCGGaUGGCGCUg--CAGG- -5'
23104 3' -59.5 NC_005178.1 + 24263 0.75 0.094915
Target:  5'- cGCAGuauuacGCCCugcgagccgaugGCGCCUACgGCGAgGUCCa -3'
miRNA:   3'- -UGUC------UGGG------------CGCGGAUGgCGCUgCAGG- -5'
23104 3' -59.5 NC_005178.1 + 23899 0.73 0.143978
Target:  5'- --uGACgCCGCGCCUAUCGUcaacGGCGUUCu -3'
miRNA:   3'- uguCUG-GGCGCGGAUGGCG----CUGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 17840 0.72 0.178323
Target:  5'- aGCGcACCCugggaGCGCCUGCCGCccucggcGAgGUCCa -3'
miRNA:   3'- -UGUcUGGG-----CGCGGAUGGCG-------CUgCAGG- -5'
23104 3' -59.5 NC_005178.1 + 33096 0.71 0.198883
Target:  5'- gACGGGCUCGCGCagACCuGCGACGa-- -3'
miRNA:   3'- -UGUCUGGGCGCGgaUGG-CGCUGCagg -5'
23104 3' -59.5 NC_005178.1 + 27581 0.7 0.214646
Target:  5'- aACAGGCCCagGCagucaagGCCUACaGCGACGcgcUCCa -3'
miRNA:   3'- -UGUCUGGG--CG-------CGGAUGgCGCUGC---AGG- -5'
23104 3' -59.5 NC_005178.1 + 18568 0.7 0.23875
Target:  5'- cACA-ACCCGCGCCgACCGUGACc--- -3'
miRNA:   3'- -UGUcUGGGCGCGGaUGGCGCUGcagg -5'
23104 3' -59.5 NC_005178.1 + 19361 0.7 0.23875
Target:  5'- cCAGACCCGCG-CUACCuGCG-CGggCUg -3'
miRNA:   3'- uGUCUGGGCGCgGAUGG-CGCuGCa-GG- -5'
23104 3' -59.5 NC_005178.1 + 6554 0.7 0.244963
Target:  5'- aGCAGGCCCuuGCCU-CCGUGcgcaGCGaUCCu -3'
miRNA:   3'- -UGUCUGGGcgCGGAuGGCGC----UGC-AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.