miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23104 3' -59.5 NC_005178.1 + 12145 1.1 0.000211
Target:  5'- cACAGACCCGCGCCUACCGCGACGUCCu -3'
miRNA:   3'- -UGUCUGGGCGCGGAUGGCGCUGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 24263 0.75 0.094915
Target:  5'- cGCAGuauuacGCCCugcgagccgaugGCGCCUACgGCGAgGUCCa -3'
miRNA:   3'- -UGUC------UGGG------------CGCGGAUGgCGCUgCAGG- -5'
23104 3' -59.5 NC_005178.1 + 32397 0.75 0.106188
Target:  5'- gUAGACCgGCGCCagGuuGCGgGCGUCCu -3'
miRNA:   3'- uGUCUGGgCGCGGa-UggCGC-UGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 23899 0.73 0.143978
Target:  5'- --uGACgCCGCGCCUAUCGUcaacGGCGUUCu -3'
miRNA:   3'- uguCUG-GGCGCGGAUGGCG----CUGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 17840 0.72 0.178323
Target:  5'- aGCGcACCCugggaGCGCCUGCCGCccucggcGAgGUCCa -3'
miRNA:   3'- -UGUcUGGG-----CGCGGAUGGCG-------CUgCAGG- -5'
23104 3' -59.5 NC_005178.1 + 30241 0.71 0.183646
Target:  5'- gGCGGACCCccauGCGCUggagcaGCCggGCGGCGUCg -3'
miRNA:   3'- -UGUCUGGG----CGCGGa-----UGG--CGCUGCAGg -5'
23104 3' -59.5 NC_005178.1 + 8660 0.71 0.193685
Target:  5'- gUAGGCCUGC-CCaGCCGCGACcagGUCUg -3'
miRNA:   3'- uGUCUGGGCGcGGaUGGCGCUG---CAGG- -5'
23104 3' -59.5 NC_005178.1 + 33096 0.71 0.198883
Target:  5'- gACGGGCUCGCGCagACCuGCGACGa-- -3'
miRNA:   3'- -UGUCUGGGCGCGgaUGG-CGCUGCagg -5'
23104 3' -59.5 NC_005178.1 + 27581 0.7 0.214646
Target:  5'- aACAGGCCCagGCagucaagGCCUACaGCGACGcgcUCCa -3'
miRNA:   3'- -UGUCUGGG--CG-------CGGAUGgCGCUGC---AGG- -5'
23104 3' -59.5 NC_005178.1 + 18568 0.7 0.23875
Target:  5'- cACA-ACCCGCGCCgACCGUGACc--- -3'
miRNA:   3'- -UGUcUGGGCGCGGaUGGCGCUGcagg -5'
23104 3' -59.5 NC_005178.1 + 19361 0.7 0.23875
Target:  5'- cCAGACCCGCG-CUACCuGCG-CGggCUg -3'
miRNA:   3'- uGUCUGGGCGCgGAUGG-CGCuGCa-GG- -5'
23104 3' -59.5 NC_005178.1 + 4042 0.7 0.243085
Target:  5'- -aAGAacuCCCGCGCCUGCCggugGCaguagcccugucgaGugGUCCa -3'
miRNA:   3'- ugUCU---GGGCGCGGAUGG----CG--------------CugCAGG- -5'
23104 3' -59.5 NC_005178.1 + 6554 0.7 0.244963
Target:  5'- aGCAGGCCCuuGCCU-CCGUGcgcaGCGaUCCu -3'
miRNA:   3'- -UGUCUGGGcgCGGAuGGCGC----UGC-AGG- -5'
23104 3' -59.5 NC_005178.1 + 1810 0.69 0.251309
Target:  5'- cGCGGACaCUGCGCaggACaagGCGcACGUCCu -3'
miRNA:   3'- -UGUCUG-GGCGCGga-UGg--CGC-UGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 20018 0.69 0.278053
Target:  5'- aACGGccaGCCCGCGCCcGCUGcCGGCcguuUCCu -3'
miRNA:   3'- -UGUC---UGGGCGCGGaUGGC-GCUGc---AGG- -5'
23104 3' -59.5 NC_005178.1 + 5440 0.69 0.278053
Target:  5'- aGCAGAugugggaaguaaUCCGgGCCaACCGCGAagaGUUCa -3'
miRNA:   3'- -UGUCU------------GGGCgCGGaUGGCGCUg--CAGG- -5'
23104 3' -59.5 NC_005178.1 + 9602 0.68 0.292255
Target:  5'- aACAG-UUCGUagGUCUGgcCCGCGACGUCCc -3'
miRNA:   3'- -UGUCuGGGCG--CGGAU--GGCGCUGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 12754 0.68 0.292255
Target:  5'- -aGGAaaCCCGCGacgcCCUgcGCCGCGccuACGUCCu -3'
miRNA:   3'- ugUCU--GGGCGC----GGA--UGGCGC---UGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 24610 0.68 0.307018
Target:  5'- cCAGGCCgGCcagcaCCUGgCGCGccACGUCCu -3'
miRNA:   3'- uGUCUGGgCGc----GGAUgGCGC--UGCAGG- -5'
23104 3' -59.5 NC_005178.1 + 12302 0.68 0.307018
Target:  5'- uGguGAUCgCGCuGCCUGCCGCuuuccugcuGGCGUCa -3'
miRNA:   3'- -UguCUGG-GCG-CGGAUGGCG---------CUGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.