miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23104 5' -55.6 NC_005178.1 + 12179 1.09 0.000546
Target:  5'- gUCGGCGGCACAACUGAAGACGGUCCAg -3'
miRNA:   3'- -AGCCGCCGUGUUGACUUCUGCCAGGU- -5'
23104 5' -55.6 NC_005178.1 + 6040 0.74 0.20061
Target:  5'- -aGGCGGCugAAgccgugaUGAAGACGGUgCCGa -3'
miRNA:   3'- agCCGCCGugUUg------ACUUCUGCCA-GGU- -5'
23104 5' -55.6 NC_005178.1 + 10459 0.73 0.217687
Target:  5'- aCGGUGGCGCGAuCUGGAGAUcGUCgAg -3'
miRNA:   3'- aGCCGCCGUGUU-GACUUCUGcCAGgU- -5'
23104 5' -55.6 NC_005178.1 + 33828 0.72 0.262386
Target:  5'- -aGGUGGC-CAGCuUGGccuGGCGGUCCAu -3'
miRNA:   3'- agCCGCCGuGUUG-ACUu--CUGCCAGGU- -5'
23104 5' -55.6 NC_005178.1 + 31661 0.72 0.269349
Target:  5'- cUGGCGGCGCGucucgcGCUGGAcGAUGGgcggCCGa -3'
miRNA:   3'- aGCCGCCGUGU------UGACUU-CUGCCa---GGU- -5'
23104 5' -55.6 NC_005178.1 + 16378 0.72 0.269349
Target:  5'- gCGGCGGCGCcuacgccCUGggG-CaGGUCCAu -3'
miRNA:   3'- aGCCGCCGUGuu-----GACuuCuG-CCAGGU- -5'
23104 5' -55.6 NC_005178.1 + 17401 0.71 0.29113
Target:  5'- cCGG-GGCGUAGCUGAAGACGGggCUg -3'
miRNA:   3'- aGCCgCCGUGUUGACUUCUGCCa-GGu -5'
23104 5' -55.6 NC_005178.1 + 9002 0.71 0.314267
Target:  5'- cCGGUGGCGCGGC---GGACGGcCCc -3'
miRNA:   3'- aGCCGCCGUGUUGacuUCUGCCaGGu -5'
23104 5' -55.6 NC_005178.1 + 28528 0.71 0.33045
Target:  5'- -gGGCGGCGCuACaUGAcuGGGCGGgggCCGu -3'
miRNA:   3'- agCCGCCGUGuUG-ACU--UCUGCCa--GGU- -5'
23104 5' -55.6 NC_005178.1 + 30834 0.69 0.420299
Target:  5'- aUGGCGGCACcuccuggcucAGCagUGAGGccgccCGGUCCAg -3'
miRNA:   3'- aGCCGCCGUG----------UUG--ACUUCu----GCCAGGU- -5'
23104 5' -55.6 NC_005178.1 + 21633 0.69 0.430066
Target:  5'- cUCGGCGGCuCAGCUcccGGACgagcuGGUCUAu -3'
miRNA:   3'- -AGCCGCCGuGUUGAcu-UCUG-----CCAGGU- -5'
23104 5' -55.6 NC_005178.1 + 22308 0.67 0.491307
Target:  5'- gCGGCcgggaaguGGCGCAGCUGuugcuccAGAaCGGUCUg -3'
miRNA:   3'- aGCCG--------CCGUGUUGACu------UCU-GCCAGGu -5'
23104 5' -55.6 NC_005178.1 + 20498 0.67 0.50191
Target:  5'- cCGGCcGCAUGGC-GAAGAUGGcCCGc -3'
miRNA:   3'- aGCCGcCGUGUUGaCUUCUGCCaGGU- -5'
23104 5' -55.6 NC_005178.1 + 10278 0.67 0.50191
Target:  5'- cUCGGCguuccugaaaucGGUuuGCAACUGGuccAGGCGGUUCu -3'
miRNA:   3'- -AGCCG------------CCG--UGUUGACU---UCUGCCAGGu -5'
23104 5' -55.6 NC_005178.1 + 35163 0.67 0.512613
Target:  5'- cUCGGUGGCAUGGC-GGAGAUcGUCgAg -3'
miRNA:   3'- -AGCCGCCGUGUUGaCUUCUGcCAGgU- -5'
23104 5' -55.6 NC_005178.1 + 21840 0.67 0.512613
Target:  5'- -aGGCGuuGCGCGGCggcucGAUGGUCCAg -3'
miRNA:   3'- agCCGC--CGUGUUGacuu-CUGCCAGGU- -5'
23104 5' -55.6 NC_005178.1 + 20598 0.67 0.512613
Target:  5'- aCGGCGGCG-AGCUG--GACGG-CCu -3'
miRNA:   3'- aGCCGCCGUgUUGACuuCUGCCaGGu -5'
23104 5' -55.6 NC_005178.1 + 10298 0.67 0.512613
Target:  5'- cUCGGCGGCACGuccu--GGCGGauagCCGa -3'
miRNA:   3'- -AGCCGCCGUGUugacuuCUGCCa---GGU- -5'
23104 5' -55.6 NC_005178.1 + 12655 0.67 0.53429
Target:  5'- cUCGGCGGC-CGGCgcgcuGGCGGguggCCu -3'
miRNA:   3'- -AGCCGCCGuGUUGacuu-CUGCCa---GGu -5'
23104 5' -55.6 NC_005178.1 + 28210 0.67 0.53429
Target:  5'- cUGGCGGCACGcucCUGA--GCGGcgCCGc -3'
miRNA:   3'- aGCCGCCGUGUu--GACUucUGCCa-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.