Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23106 | 5' | -56 | NC_005178.1 | + | 12835 | 1.1 | 0.000361 |
Target: 5'- cCUAUGGCACCGCUCGCCGCUGGAAACa -3' miRNA: 3'- -GAUACCGUGGCGAGCGGCGACCUUUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 4008 | 0.72 | 0.229645 |
Target: 5'- --cUGcGCACCGUcCGCCGCUGcGAACu -3' miRNA: 3'- gauAC-CGUGGCGaGCGGCGACcUUUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 11627 | 0.72 | 0.229645 |
Target: 5'- -aGUGGCAucCCGCUgGCCagGCUGGuGACc -3' miRNA: 3'- gaUACCGU--GGCGAgCGG--CGACCuUUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 31061 | 0.72 | 0.248929 |
Target: 5'- ---aGGCGUCGC-CGCCGCUGGGuuuuGCu -3' miRNA: 3'- gauaCCGUGGCGaGCGGCGACCUu---UG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 22652 | 0.71 | 0.284015 |
Target: 5'- -gAUGGCGCUGgggUCGCgGCUGGAGc- -3' miRNA: 3'- gaUACCGUGGCg--AGCGgCGACCUUug -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 23288 | 0.71 | 0.284015 |
Target: 5'- --uUGGCAUCGUUCGCCGUaacgaUGGugccGACu -3' miRNA: 3'- gauACCGUGGCGAGCGGCG-----ACCu---UUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 30438 | 0.7 | 0.299108 |
Target: 5'- ---cGGCGCCG---GCCGCUGGAggUa -3' miRNA: 3'- gauaCCGUGGCgagCGGCGACCUuuG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 21810 | 0.7 | 0.306884 |
Target: 5'- uUAUGGCGCUGCUCGCa-CUGcGAu-- -3' miRNA: 3'- gAUACCGUGGCGAGCGgcGAC-CUuug -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 21186 | 0.7 | 0.310037 |
Target: 5'- ---aGGCGCCGC-CGCCcgacucgcuggucugGCUGGuGAGCg -3' miRNA: 3'- gauaCCGUGGCGaGCGG---------------CGACC-UUUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 4635 | 0.7 | 0.322898 |
Target: 5'- ---cGGCauaGCCgGCgaccaCGCCGCUGGAGAUc -3' miRNA: 3'- gauaCCG---UGG-CGa----GCGGCGACCUUUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 10356 | 0.7 | 0.339527 |
Target: 5'- ---gGGCugCGCUgGCCgaGCUGGuGGGCa -3' miRNA: 3'- gauaCCGugGCGAgCGG--CGACC-UUUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 28543 | 0.7 | 0.339527 |
Target: 5'- aCUGggcgGGgGCCGUcCGCCGCgccaccGGggGCg -3' miRNA: 3'- -GAUa---CCgUGGCGaGCGGCGa-----CCuuUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 17352 | 0.68 | 0.393057 |
Target: 5'- ---cGGCAgcCCGC--GCCgGCUGGAAACg -3' miRNA: 3'- gauaCCGU--GGCGagCGG-CGACCUUUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 28295 | 0.68 | 0.396816 |
Target: 5'- ---cGGCGCUGCgggagcugccgggGCCGCUGGAGugGCu -3' miRNA: 3'- gauaCCGUGGCGag-----------CGGCGACCUU--UG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 25321 | 0.68 | 0.402497 |
Target: 5'- gCUGUcGGC-CCGCUUgGCCaggcGCUGGAAAa -3' miRNA: 3'- -GAUA-CCGuGGCGAG-CGG----CGACCUUUg -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 11048 | 0.68 | 0.412079 |
Target: 5'- uUcgGGCAgCGCUCGCaac-GGAAGCa -3' miRNA: 3'- gAuaCCGUgGCGAGCGgcgaCCUUUG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 1731 | 0.68 | 0.4218 |
Target: 5'- ----uGCACUGCUCGCCGaaCUGGGc-- -3' miRNA: 3'- gauacCGUGGCGAGCGGC--GACCUuug -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 1849 | 0.68 | 0.431659 |
Target: 5'- uUcgGGaCGuuGUUCGUCGCUGGGuuCg -3' miRNA: 3'- gAuaCC-GUggCGAGCGGCGACCUuuG- -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 4926 | 0.67 | 0.451773 |
Target: 5'- ---cGGCACCGCUCGgCGaCcGGGu-- -3' miRNA: 3'- gauaCCGUGGCGAGCgGC-GaCCUuug -5' |
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23106 | 5' | -56 | NC_005178.1 | + | 7130 | 0.67 | 0.48182 |
Target: 5'- ---cGGCGCCGCugaacaaccccgUCGCgaugcgcUGCUGGAAAg -3' miRNA: 3'- gauaCCGUGGCG------------AGCG-------GCGACCUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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