miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23106 5' -56 NC_005178.1 + 12835 1.1 0.000361
Target:  5'- cCUAUGGCACCGCUCGCCGCUGGAAACa -3'
miRNA:   3'- -GAUACCGUGGCGAGCGGCGACCUUUG- -5'
23106 5' -56 NC_005178.1 + 26180 0.66 0.559024
Target:  5'- ---cGGCGCgGCggugGCCGCUGcGGGCg -3'
miRNA:   3'- gauaCCGUGgCGag--CGGCGACcUUUG- -5'
23106 5' -56 NC_005178.1 + 28488 0.66 0.559024
Target:  5'- ---gGGCuuacuCCGCU-GCUGCUGGAc-- -3'
miRNA:   3'- gauaCCGu----GGCGAgCGGCGACCUuug -5'
23106 5' -56 NC_005178.1 + 11688 0.66 0.514969
Target:  5'- --cUGcGCACCGUcgaaucgcugaUCGCuCGCUGGgcGCc -3'
miRNA:   3'- gauAC-CGUGGCG-----------AGCG-GCGACCuuUG- -5'
23106 5' -56 NC_005178.1 + 23181 0.67 0.497737
Target:  5'- -gGUGaGCACUGCcgaGCCGUucgauuaccuguuccUGGAGACg -3'
miRNA:   3'- gaUAC-CGUGGCGag-CGGCG---------------ACCUUUG- -5'
23106 5' -56 NC_005178.1 + 4043 0.67 0.493469
Target:  5'- ---cGGCAaCCGCuacuUCGCCcgcgaGCUGGAGGa -3'
miRNA:   3'- gauaCCGU-GGCG----AGCGG-----CGACCUUUg -5'
23106 5' -56 NC_005178.1 + 7130 0.67 0.48182
Target:  5'- ---cGGCGCCGCugaacaaccccgUCGCgaugcgcUGCUGGAAAg -3'
miRNA:   3'- gauaCCGUGGCG------------AGCG-------GCGACCUUUg -5'
23106 5' -56 NC_005178.1 + 1849 0.68 0.431659
Target:  5'- uUcgGGaCGuuGUUCGUCGCUGGGuuCg -3'
miRNA:   3'- gAuaCC-GUggCGAGCGGCGACCUuuG- -5'
23106 5' -56 NC_005178.1 + 1731 0.68 0.4218
Target:  5'- ----uGCACUGCUCGCCGaaCUGGGc-- -3'
miRNA:   3'- gauacCGUGGCGAGCGGC--GACCUuug -5'
23106 5' -56 NC_005178.1 + 11048 0.68 0.412079
Target:  5'- uUcgGGCAgCGCUCGCaac-GGAAGCa -3'
miRNA:   3'- gAuaCCGUgGCGAGCGgcgaCCUUUG- -5'
23106 5' -56 NC_005178.1 + 4008 0.72 0.229645
Target:  5'- --cUGcGCACCGUcCGCCGCUGcGAACu -3'
miRNA:   3'- gauAC-CGUGGCGaGCGGCGACcUUUG- -5'
23106 5' -56 NC_005178.1 + 31061 0.72 0.248929
Target:  5'- ---aGGCGUCGC-CGCCGCUGGGuuuuGCu -3'
miRNA:   3'- gauaCCGUGGCGaGCGGCGACCUu---UG- -5'
23106 5' -56 NC_005178.1 + 21810 0.7 0.306884
Target:  5'- uUAUGGCGCUGCUCGCa-CUGcGAu-- -3'
miRNA:   3'- gAUACCGUGGCGAGCGgcGAC-CUuug -5'
23106 5' -56 NC_005178.1 + 28543 0.7 0.339527
Target:  5'- aCUGggcgGGgGCCGUcCGCCGCgccaccGGggGCg -3'
miRNA:   3'- -GAUa---CCgUGGCGaGCGGCGa-----CCuuUG- -5'
23106 5' -56 NC_005178.1 + 10356 0.7 0.339527
Target:  5'- ---gGGCugCGCUgGCCgaGCUGGuGGGCa -3'
miRNA:   3'- gauaCCGugGCGAgCGG--CGACC-UUUG- -5'
23106 5' -56 NC_005178.1 + 17352 0.68 0.393057
Target:  5'- ---cGGCAgcCCGC--GCCgGCUGGAAACg -3'
miRNA:   3'- gauaCCGU--GGCGagCGG-CGACCUUUG- -5'
23106 5' -56 NC_005178.1 + 28295 0.68 0.396816
Target:  5'- ---cGGCGCUGCgggagcugccgggGCCGCUGGAGugGCu -3'
miRNA:   3'- gauaCCGUGGCGag-----------CGGCGACCUU--UG- -5'
23106 5' -56 NC_005178.1 + 21366 0.66 0.547897
Target:  5'- ---cGGuCACCGCUCGCaGCagGGuuACc -3'
miRNA:   3'- gauaCC-GUGGCGAGCGgCGa-CCuuUG- -5'
23106 5' -56 NC_005178.1 + 23288 0.71 0.284015
Target:  5'- --uUGGCAUCGUUCGCCGUaacgaUGGugccGACu -3'
miRNA:   3'- gauACCGUGGCGAGCGGCG-----ACCu---UUG- -5'
23106 5' -56 NC_005178.1 + 22652 0.71 0.284015
Target:  5'- -gAUGGCGCUGgggUCGCgGCUGGAGc- -3'
miRNA:   3'- gaUACCGUGGCg--AGCGgCGACCUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.