miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23106 5' -56 NC_005178.1 + 25321 0.68 0.402497
Target:  5'- gCUGUcGGC-CCGCUUgGCCaggcGCUGGAAAa -3'
miRNA:   3'- -GAUA-CCGuGGCGAG-CGG----CGACCUUUg -5'
23106 5' -56 NC_005178.1 + 26180 0.66 0.559024
Target:  5'- ---cGGCGCgGCggugGCCGCUGcGGGCg -3'
miRNA:   3'- gauaCCGUGgCGag--CGGCGACcUUUG- -5'
23106 5' -56 NC_005178.1 + 28295 0.68 0.396816
Target:  5'- ---cGGCGCUGCgggagcugccgggGCCGCUGGAGugGCu -3'
miRNA:   3'- gauaCCGUGGCGag-----------CGGCGACCUU--UG- -5'
23106 5' -56 NC_005178.1 + 28488 0.66 0.559024
Target:  5'- ---gGGCuuacuCCGCU-GCUGCUGGAc-- -3'
miRNA:   3'- gauaCCGu----GGCGAgCGGCGACCUuug -5'
23106 5' -56 NC_005178.1 + 28543 0.7 0.339527
Target:  5'- aCUGggcgGGgGCCGUcCGCCGCgccaccGGggGCg -3'
miRNA:   3'- -GAUa---CCgUGGCGaGCGGCGa-----CCuuUG- -5'
23106 5' -56 NC_005178.1 + 30438 0.7 0.299108
Target:  5'- ---cGGCGCCG---GCCGCUGGAggUa -3'
miRNA:   3'- gauaCCGUGGCgagCGGCGACCUuuG- -5'
23106 5' -56 NC_005178.1 + 31061 0.72 0.248929
Target:  5'- ---aGGCGUCGC-CGCCGCUGGGuuuuGCu -3'
miRNA:   3'- gauaCCGUGGCGaGCGGCGACCUu---UG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.