Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23107 | 5' | -60.6 | NC_005178.1 | + | 24895 | 0.68 | 0.243693 |
Target: 5'- cCACCCGccaGCGcGCCGGC-CGccGAGCCGUa -3' miRNA: 3'- -GUGGGCc--UGC-CGGUCGuGC--UUCGGUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 17319 | 0.68 | 0.231279 |
Target: 5'- uGCgCCGGACGGCgGgGC-CGAGGUCGc -3' miRNA: 3'- gUG-GGCCUGCCGgU-CGuGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 6990 | 0.68 | 0.213662 |
Target: 5'- cCACCaaCGGAUcGCCAgGCGCGAggaaGGCCAUg -3' miRNA: 3'- -GUGG--GCCUGcCGGU-CGUGCU----UCGGUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 31779 | 0.69 | 0.20805 |
Target: 5'- gACCUacaggGGGCGGCCAGUGCuGGAGCa-- -3' miRNA: 3'- gUGGG-----CCUGCCGGUCGUG-CUUCGgua -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 8888 | 0.69 | 0.20805 |
Target: 5'- uCGCCCGGuACauccagacccugGGCCAGCAgGAucGGCCc- -3' miRNA: 3'- -GUGGGCC-UG------------CCGGUCGUgCU--UCGGua -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 24006 | 0.69 | 0.20805 |
Target: 5'- gACCCGccgcauaGGCgAGCugGAAGCCGa -3' miRNA: 3'- gUGGGCcug----CCGgUCGugCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 5549 | 0.69 | 0.202567 |
Target: 5'- gCGCCUGGGCGGCUA-CGuCGAGGCgAUc -3' miRNA: 3'- -GUGGGCCUGCCGGUcGU-GCUUCGgUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 34831 | 0.69 | 0.197209 |
Target: 5'- uCGCCCaGGGCGGCguucagCAGCGCGgcGCgGg -3' miRNA: 3'- -GUGGG-CCUGCCG------GUCGUGCuuCGgUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 9924 | 0.69 | 0.195626 |
Target: 5'- gACCCuGGAgGGCCAGCGCauccuguuguugcuGGAGCgCGUc -3' miRNA: 3'- gUGGG-CCUgCCGGUCGUG--------------CUUCG-GUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 18631 | 0.69 | 0.181873 |
Target: 5'- gCAgUUGGGCGGUCAgGCuggGCGAGGCCGUa -3' miRNA: 3'- -GUgGGCCUGCCGGU-CG---UGCUUCGGUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 15931 | 0.69 | 0.181873 |
Target: 5'- aACCCGGACGaCCAGgACG-AGCUg- -3' miRNA: 3'- gUGGGCCUGCcGGUCgUGCuUCGGua -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 27883 | 0.69 | 0.181873 |
Target: 5'- cCGCCU---CGGCCGGCucgGCGAAGCCAc -3' miRNA: 3'- -GUGGGccuGCCGGUCG---UGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 26260 | 0.7 | 0.177001 |
Target: 5'- cCACCUGGGCGGacucgaaCAGCuCGggGCgGUu -3' miRNA: 3'- -GUGGGCCUGCCg------GUCGuGCuuCGgUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 34588 | 0.7 | 0.177001 |
Target: 5'- gCGCUCGGGCGGCCGcgaggauCGCG-GGCCAUc -3' miRNA: 3'- -GUGGGCCUGCCGGUc------GUGCuUCGGUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 22276 | 0.7 | 0.154343 |
Target: 5'- gGCCCGccaGGCGGCgGGCgAUGAAGCCc- -3' miRNA: 3'- gUGGGC---CUGCCGgUCG-UGCUUCGGua -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 18979 | 0.71 | 0.148898 |
Target: 5'- gCGCCUGGucACGGUCGGCGCGGGuugugaucgagcgcGCCAg -3' miRNA: 3'- -GUGGGCC--UGCCGGUCGUGCUU--------------CGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 12653 | 0.71 | 0.146039 |
Target: 5'- gGCUCGG-CGGCCGGCGCGcuggcggguGGCCu- -3' miRNA: 3'- gUGGGCCuGCCGGUCGUGCu--------UCGGua -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 13889 | 0.71 | 0.142042 |
Target: 5'- cCGCCCGGcgugaACgGGCCAGCGCGGA-CUAUg -3' miRNA: 3'- -GUGGGCC-----UG-CCGGUCGUGCUUcGGUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 3625 | 0.72 | 0.116758 |
Target: 5'- -cCCCGGAaaGCCGGCACcAGGCCGc -3' miRNA: 3'- guGGGCCUgcCGGUCGUGcUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 31974 | 0.75 | 0.07181 |
Target: 5'- aGCCUGGucuaugcacugcGCGGCCAGCA-GAAGCCGc -3' miRNA: 3'- gUGGGCC------------UGCCGGUCGUgCUUCGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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