Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23107 | 5' | -60.6 | NC_005178.1 | + | 31100 | 0.75 | 0.067574 |
Target: 5'- gCACCUGGACGGUCAGCAuCGGcaccgacGGCCc- -3' miRNA: 3'- -GUGGGCCUGCCGGUCGU-GCU-------UCGGua -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 31779 | 0.69 | 0.20805 |
Target: 5'- gACCUacaggGGGCGGCCAGUGCuGGAGCa-- -3' miRNA: 3'- gUGGG-----CCUGCCGGUCGUG-CUUCGgua -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 9173 | 0.67 | 0.250105 |
Target: 5'- -cCCUGGACcuGGCCGccaccCGCGAAGCCGa -3' miRNA: 3'- guGGGCCUG--CCGGUc----GUGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 21342 | 0.67 | 0.263347 |
Target: 5'- uGCCCGcuGCGGCaUGGC-CGAGGCCGg -3' miRNA: 3'- gUGGGCc-UGCCG-GUCGuGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 24593 | 0.67 | 0.266062 |
Target: 5'- gGCCUGGAacugggucaccaggcCGGCCAGCACcuggcgcGCCAc -3' miRNA: 3'- gUGGGCCU---------------GCCGGUCGUGcuu----CGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 14860 | 0.67 | 0.270178 |
Target: 5'- gACCCGGcgauccagcuCGGCCuGgGCGAGGUCGc -3' miRNA: 3'- gUGGGCCu---------GCCGGuCgUGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 32612 | 0.67 | 0.270178 |
Target: 5'- ---gCGGGCGGCC-GCugGcGGCCAg -3' miRNA: 3'- guggGCCUGCCGGuCGugCuUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 33808 | 0.67 | 0.277152 |
Target: 5'- gGCCCGG-CGcGUCAGCuuGAagguGGCCAg -3' miRNA: 3'- gUGGGCCuGC-CGGUCGugCU----UCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 23675 | 0.66 | 0.298933 |
Target: 5'- uCACgCCGGGCGGCgcuggccuuCGGguCGggGUCGa -3' miRNA: 3'- -GUG-GGCCUGCCG---------GUCguGCuuCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 32772 | 0.66 | 0.298933 |
Target: 5'- gAUCCaGGCGGCCGaaacggauuuGC-CGAAGCCGg -3' miRNA: 3'- gUGGGcCUGCCGGU----------CGuGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 5950 | 0.66 | 0.314176 |
Target: 5'- gGCCUGGACGGggcggaCCAGguCcAGGCCGg -3' miRNA: 3'- gUGGGCCUGCC------GGUCguGcUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 28726 | 0.66 | 0.33 |
Target: 5'- aCACCCGGcACGcGCCGG-GCGAcuuucuuGCCGa -3' miRNA: 3'- -GUGGGCC-UGC-CGGUCgUGCUu------CGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 17161 | 0.66 | 0.33813 |
Target: 5'- uCGCCUGGGCguccagGGCCGGCuucaggGCGGucagGGCCGc -3' miRNA: 3'- -GUGGGCCUG------CCGGUCG------UGCU----UCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 24895 | 0.68 | 0.243693 |
Target: 5'- cCACCCGccaGCGcGCCGGC-CGccGAGCCGUa -3' miRNA: 3'- -GUGGGCc--UGC-CGGUCGuGC--UUCGGUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 6990 | 0.68 | 0.213662 |
Target: 5'- cCACCaaCGGAUcGCCAgGCGCGAggaaGGCCAUg -3' miRNA: 3'- -GUGG--GCCUGcCGGU-CGUGCU----UCGGUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 24006 | 0.69 | 0.20805 |
Target: 5'- gACCCGccgcauaGGCgAGCugGAAGCCGa -3' miRNA: 3'- gUGGGCcug----CCGgUCGugCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 34831 | 0.69 | 0.197209 |
Target: 5'- uCGCCCaGGGCGGCguucagCAGCGCGgcGCgGg -3' miRNA: 3'- -GUGGG-CCUGCCG------GUCGUGCuuCGgUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 9924 | 0.69 | 0.195626 |
Target: 5'- gACCCuGGAgGGCCAGCGCauccuguuguugcuGGAGCgCGUc -3' miRNA: 3'- gUGGG-CCUgCCGGUCGUG--------------CUUCG-GUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 27883 | 0.69 | 0.181873 |
Target: 5'- cCGCCU---CGGCCGGCucgGCGAAGCCAc -3' miRNA: 3'- -GUGGGccuGCCGGUCG---UGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 34588 | 0.7 | 0.177001 |
Target: 5'- gCGCUCGGGCGGCCGcgaggauCGCG-GGCCAUc -3' miRNA: 3'- -GUGGGCCUGCCGGUc------GUGCuUCGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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