miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23107 5' -60.6 NC_005178.1 + 27449 0.66 0.33813
Target:  5'- cCACCaCGG-CGGcCCAGCGCaucAGCCu- -3'
miRNA:   3'- -GUGG-GCCuGCC-GGUCGUGcu-UCGGua -5'
23107 5' -60.6 NC_005178.1 + 17319 0.68 0.231279
Target:  5'- uGCgCCGGACGGCgGgGC-CGAGGUCGc -3'
miRNA:   3'- gUG-GGCCUGCCGgU-CGuGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 18690 0.67 0.250105
Target:  5'- -uCCCGGuccucagaaACGGCCAGCuc-AAGCCAa -3'
miRNA:   3'- guGGGCC---------UGCCGGUCGugcUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 21647 0.66 0.291528
Target:  5'- -uCCCGGACGaGCUGGUcuAUGAAGCgGUc -3'
miRNA:   3'- guGGGCCUGC-CGGUCG--UGCUUCGgUA- -5'
23107 5' -60.6 NC_005178.1 + 26329 0.66 0.298933
Target:  5'- uCGCCagGGcgaACGGCacuCAGUAUGAGGCCGUg -3'
miRNA:   3'- -GUGGg-CC---UGCCG---GUCGUGCUUCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 17893 0.66 0.298933
Target:  5'- gACCCGGuAC-GCCAGCGCGccuGGCa-- -3'
miRNA:   3'- gUGGGCC-UGcCGGUCGUGCu--UCGgua -5'
23107 5' -60.6 NC_005178.1 + 7748 0.66 0.314176
Target:  5'- gCGCCUGG-CGGuccuCCAGgGCGGAGuCCAg -3'
miRNA:   3'- -GUGGGCCuGCC----GGUCgUGCUUC-GGUa -5'
23107 5' -60.6 NC_005178.1 + 22471 0.66 0.314176
Target:  5'- cUugCCGGACGacGUCGGCGgCGAgggugAGCCGUc -3'
miRNA:   3'- -GugGGCCUGC--CGGUCGU-GCU-----UCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 3924 0.66 0.314176
Target:  5'- aGCCUGGGC-GCU-GCACGAAGCgGa -3'
miRNA:   3'- gUGGGCCUGcCGGuCGUGCUUCGgUa -5'
23107 5' -60.6 NC_005178.1 + 31779 0.69 0.20805
Target:  5'- gACCUacaggGGGCGGCCAGUGCuGGAGCa-- -3'
miRNA:   3'- gUGGG-----CCUGCCGGUCGUG-CUUCGgua -5'
23107 5' -60.6 NC_005178.1 + 8888 0.69 0.20805
Target:  5'- uCGCCCGGuACauccagacccugGGCCAGCAgGAucGGCCc- -3'
miRNA:   3'- -GUGGGCC-UG------------CCGGUCGUgCU--UCGGua -5'
23107 5' -60.6 NC_005178.1 + 5549 0.69 0.202567
Target:  5'- gCGCCUGGGCGGCUA-CGuCGAGGCgAUc -3'
miRNA:   3'- -GUGGGCCUGCCGGUcGU-GCUUCGgUA- -5'
23107 5' -60.6 NC_005178.1 + 23458 0.77 0.052148
Target:  5'- gGCCaGGGCGcCCGGCGCGAAGCCGg -3'
miRNA:   3'- gUGGgCCUGCcGGUCGUGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 31100 0.75 0.067574
Target:  5'- gCACCUGGACGGUCAGCAuCGGcaccgacGGCCc- -3'
miRNA:   3'- -GUGGGCCUGCCGGUCGU-GCU-------UCGGua -5'
23107 5' -60.6 NC_005178.1 + 31974 0.75 0.07181
Target:  5'- aGCCUGGucuaugcacugcGCGGCCAGCA-GAAGCCGc -3'
miRNA:   3'- gUGGGCC------------UGCCGGUCGUgCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 13889 0.71 0.142042
Target:  5'- cCGCCCGGcgugaACgGGCCAGCGCGGA-CUAUg -3'
miRNA:   3'- -GUGGGCC-----UG-CCGGUCGUGCUUcGGUA- -5'
23107 5' -60.6 NC_005178.1 + 12653 0.71 0.146039
Target:  5'- gGCUCGG-CGGCCGGCGCGcuggcggguGGCCu- -3'
miRNA:   3'- gUGGGCCuGCCGGUCGUGCu--------UCGGua -5'
23107 5' -60.6 NC_005178.1 + 22276 0.7 0.154343
Target:  5'- gGCCCGccaGGCGGCgGGCgAUGAAGCCc- -3'
miRNA:   3'- gUGGGC---CUGCCGgUCG-UGCUUCGGua -5'
23107 5' -60.6 NC_005178.1 + 18631 0.69 0.181873
Target:  5'- gCAgUUGGGCGGUCAgGCuggGCGAGGCCGUa -3'
miRNA:   3'- -GUgGGCCUGCCGGU-CG---UGCUUCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 15931 0.69 0.181873
Target:  5'- aACCCGGACGaCCAGgACG-AGCUg- -3'
miRNA:   3'- gUGGGCCUGCcGGUCgUGCuUCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.