miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23107 5' -60.6 NC_005178.1 + 2137 0.78 0.042475
Target:  5'- gCugUCGGugGCGGCCAGCGcCGggGCCAg -3'
miRNA:   3'- -GugGGCC--UGCCGGUCGU-GCuuCGGUa -5'
23107 5' -60.6 NC_005178.1 + 3625 0.72 0.116758
Target:  5'- -cCCCGGAaaGCCGGCACcAGGCCGc -3'
miRNA:   3'- guGGGCCUgcCGGUCGUGcUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 3924 0.66 0.314176
Target:  5'- aGCCUGGGC-GCU-GCACGAAGCgGa -3'
miRNA:   3'- gUGGGCCUGcCGGuCGUGCUUCGgUa -5'
23107 5' -60.6 NC_005178.1 + 5549 0.69 0.202567
Target:  5'- gCGCCUGGGCGGCUA-CGuCGAGGCgAUc -3'
miRNA:   3'- -GUGGGCCUGCCGGUcGU-GCUUCGgUA- -5'
23107 5' -60.6 NC_005178.1 + 5950 0.66 0.314176
Target:  5'- gGCCUGGACGGggcggaCCAGguCcAGGCCGg -3'
miRNA:   3'- gUGGGCCUGCC------GGUCguGcUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 6148 0.66 0.33813
Target:  5'- aGCgCCGcGAaGGCUAGCAC-AAGCCAc -3'
miRNA:   3'- gUG-GGC-CUgCCGGUCGUGcUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 6990 0.68 0.213662
Target:  5'- cCACCaaCGGAUcGCCAgGCGCGAggaaGGCCAUg -3'
miRNA:   3'- -GUGG--GCCUGcCGGU-CGUGCU----UCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 7748 0.66 0.314176
Target:  5'- gCGCCUGG-CGGuccuCCAGgGCGGAGuCCAg -3'
miRNA:   3'- -GUGGGCCuGCC----GGUCgUGCUUC-GGUa -5'
23107 5' -60.6 NC_005178.1 + 8888 0.69 0.20805
Target:  5'- uCGCCCGGuACauccagacccugGGCCAGCAgGAucGGCCc- -3'
miRNA:   3'- -GUGGGCC-UG------------CCGGUCGUgCU--UCGGua -5'
23107 5' -60.6 NC_005178.1 + 9173 0.67 0.250105
Target:  5'- -cCCUGGACcuGGCCGccaccCGCGAAGCCGa -3'
miRNA:   3'- guGGGCCUG--CCGGUc----GUGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 9924 0.69 0.195626
Target:  5'- gACCCuGGAgGGCCAGCGCauccuguuguugcuGGAGCgCGUc -3'
miRNA:   3'- gUGGG-CCUgCCGGUCGUG--------------CUUCG-GUA- -5'
23107 5' -60.6 NC_005178.1 + 12653 0.71 0.146039
Target:  5'- gGCUCGG-CGGCCGGCGCGcuggcggguGGCCu- -3'
miRNA:   3'- gUGGGCCuGCCGGUCGUGCu--------UCGGua -5'
23107 5' -60.6 NC_005178.1 + 13889 0.71 0.142042
Target:  5'- cCGCCCGGcgugaACgGGCCAGCGCGGA-CUAUg -3'
miRNA:   3'- -GUGGGCC-----UG-CCGGUCGUGCUUcGGUA- -5'
23107 5' -60.6 NC_005178.1 + 14015 1.04 0.000345
Target:  5'- cCACCCGGACGGCCAGCACGAAGCCAUu -3'
miRNA:   3'- -GUGGGCCUGCCGGUCGUGCUUCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 14860 0.67 0.270178
Target:  5'- gACCCGGcgauccagcuCGGCCuGgGCGAGGUCGc -3'
miRNA:   3'- gUGGGCCu---------GCCGGuCgUGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 15931 0.69 0.181873
Target:  5'- aACCCGGACGaCCAGgACG-AGCUg- -3'
miRNA:   3'- gUGGGCCUGCcGGUCgUGCuUCGGua -5'
23107 5' -60.6 NC_005178.1 + 17161 0.66 0.33813
Target:  5'- uCGCCUGGGCguccagGGCCGGCuucaggGCGGucagGGCCGc -3'
miRNA:   3'- -GUGGGCCUG------CCGGUCG------UGCU----UCGGUa -5'
23107 5' -60.6 NC_005178.1 + 17319 0.68 0.231279
Target:  5'- uGCgCCGGACGGCgGgGC-CGAGGUCGc -3'
miRNA:   3'- gUG-GGCCUGCCGgU-CGuGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 17893 0.66 0.298933
Target:  5'- gACCCGGuAC-GCCAGCGCGccuGGCa-- -3'
miRNA:   3'- gUGGGCC-UGcCGGUCGUGCu--UCGgua -5'
23107 5' -60.6 NC_005178.1 + 18631 0.69 0.181873
Target:  5'- gCAgUUGGGCGGUCAgGCuggGCGAGGCCGUa -3'
miRNA:   3'- -GUgGGCCUGCCGGU-CG---UGCUUCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.