miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23107 5' -60.6 NC_005178.1 + 14015 1.04 0.000345
Target:  5'- cCACCCGGACGGCCAGCACGAAGCCAUu -3'
miRNA:   3'- -GUGGGCCUGCCGGUCGUGCUUCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 2137 0.78 0.042475
Target:  5'- gCugUCGGugGCGGCCAGCGcCGggGCCAg -3'
miRNA:   3'- -GugGGCC--UGCCGGUCGU-GCuuCGGUa -5'
23107 5' -60.6 NC_005178.1 + 23458 0.77 0.052148
Target:  5'- gGCCaGGGCGcCCGGCGCGAAGCCGg -3'
miRNA:   3'- gUGGgCCUGCcGGUCGUGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 31100 0.75 0.067574
Target:  5'- gCACCUGGACGGUCAGCAuCGGcaccgacGGCCc- -3'
miRNA:   3'- -GUGGGCCUGCCGGUCGU-GCU-------UCGGua -5'
23107 5' -60.6 NC_005178.1 + 31974 0.75 0.07181
Target:  5'- aGCCUGGucuaugcacugcGCGGCCAGCA-GAAGCCGc -3'
miRNA:   3'- gUGGGCC------------UGCCGGUCGUgCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 3625 0.72 0.116758
Target:  5'- -cCCCGGAaaGCCGGCACcAGGCCGc -3'
miRNA:   3'- guGGGCCUgcCGGUCGUGcUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 13889 0.71 0.142042
Target:  5'- cCGCCCGGcgugaACgGGCCAGCGCGGA-CUAUg -3'
miRNA:   3'- -GUGGGCC-----UG-CCGGUCGUGCUUcGGUA- -5'
23107 5' -60.6 NC_005178.1 + 12653 0.71 0.146039
Target:  5'- gGCUCGG-CGGCCGGCGCGcuggcggguGGCCu- -3'
miRNA:   3'- gUGGGCCuGCCGGUCGUGCu--------UCGGua -5'
23107 5' -60.6 NC_005178.1 + 18979 0.71 0.148898
Target:  5'- gCGCCUGGucACGGUCGGCGCGGGuugugaucgagcgcGCCAg -3'
miRNA:   3'- -GUGGGCC--UGCCGGUCGUGCUU--------------CGGUa -5'
23107 5' -60.6 NC_005178.1 + 22276 0.7 0.154343
Target:  5'- gGCCCGccaGGCGGCgGGCgAUGAAGCCc- -3'
miRNA:   3'- gUGGGC---CUGCCGgUCG-UGCUUCGGua -5'
23107 5' -60.6 NC_005178.1 + 34588 0.7 0.177001
Target:  5'- gCGCUCGGGCGGCCGcgaggauCGCG-GGCCAUc -3'
miRNA:   3'- -GUGGGCCUGCCGGUc------GUGCuUCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 26260 0.7 0.177001
Target:  5'- cCACCUGGGCGGacucgaaCAGCuCGggGCgGUu -3'
miRNA:   3'- -GUGGGCCUGCCg------GUCGuGCuuCGgUA- -5'
23107 5' -60.6 NC_005178.1 + 15931 0.69 0.181873
Target:  5'- aACCCGGACGaCCAGgACG-AGCUg- -3'
miRNA:   3'- gUGGGCCUGCcGGUCgUGCuUCGGua -5'
23107 5' -60.6 NC_005178.1 + 27883 0.69 0.181873
Target:  5'- cCGCCU---CGGCCGGCucgGCGAAGCCAc -3'
miRNA:   3'- -GUGGGccuGCCGGUCG---UGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 18631 0.69 0.181873
Target:  5'- gCAgUUGGGCGGUCAgGCuggGCGAGGCCGUa -3'
miRNA:   3'- -GUgGGCCUGCCGGU-CG---UGCUUCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 9924 0.69 0.195626
Target:  5'- gACCCuGGAgGGCCAGCGCauccuguuguugcuGGAGCgCGUc -3'
miRNA:   3'- gUGGG-CCUgCCGGUCGUG--------------CUUCG-GUA- -5'
23107 5' -60.6 NC_005178.1 + 34831 0.69 0.197209
Target:  5'- uCGCCCaGGGCGGCguucagCAGCGCGgcGCgGg -3'
miRNA:   3'- -GUGGG-CCUGCCG------GUCGUGCuuCGgUa -5'
23107 5' -60.6 NC_005178.1 + 5549 0.69 0.202567
Target:  5'- gCGCCUGGGCGGCUA-CGuCGAGGCgAUc -3'
miRNA:   3'- -GUGGGCCUGCCGGUcGU-GCUUCGgUA- -5'
23107 5' -60.6 NC_005178.1 + 31779 0.69 0.20805
Target:  5'- gACCUacaggGGGCGGCCAGUGCuGGAGCa-- -3'
miRNA:   3'- gUGGG-----CCUGCCGGUCGUG-CUUCGgua -5'
23107 5' -60.6 NC_005178.1 + 8888 0.69 0.20805
Target:  5'- uCGCCCGGuACauccagacccugGGCCAGCAgGAucGGCCc- -3'
miRNA:   3'- -GUGGGCC-UG------------CCGGUCGUgCU--UCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.