Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23107 | 5' | -60.6 | NC_005178.1 | + | 6148 | 0.66 | 0.33813 |
Target: 5'- aGCgCCGcGAaGGCUAGCAC-AAGCCAc -3' miRNA: 3'- gUG-GGC-CUgCCGGUCGUGcUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 3924 | 0.66 | 0.314176 |
Target: 5'- aGCCUGGGC-GCU-GCACGAAGCgGa -3' miRNA: 3'- gUGGGCCUGcCGGuCGUGCUUCGgUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 22471 | 0.66 | 0.314176 |
Target: 5'- cUugCCGGACGacGUCGGCGgCGAgggugAGCCGUc -3' miRNA: 3'- -GugGGCCUGC--CGGUCGU-GCU-----UCGGUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 7748 | 0.66 | 0.314176 |
Target: 5'- gCGCCUGG-CGGuccuCCAGgGCGGAGuCCAg -3' miRNA: 3'- -GUGGGCCuGCC----GGUCgUGCUUC-GGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 17893 | 0.66 | 0.298933 |
Target: 5'- gACCCGGuAC-GCCAGCGCGccuGGCa-- -3' miRNA: 3'- gUGGGCC-UGcCGGUCGUGCu--UCGgua -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 26329 | 0.66 | 0.298933 |
Target: 5'- uCGCCagGGcgaACGGCacuCAGUAUGAGGCCGUg -3' miRNA: 3'- -GUGGg-CC---UGCCG---GUCGUGCUUCGGUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 21647 | 0.66 | 0.291528 |
Target: 5'- -uCCCGGACGaGCUGGUcuAUGAAGCgGUc -3' miRNA: 3'- guGGGCCUGC-CGGUCG--UGCUUCGgUA- -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 23675 | 0.66 | 0.298933 |
Target: 5'- uCACgCCGGGCGGCgcuggccuuCGGguCGggGUCGa -3' miRNA: 3'- -GUG-GGCCUGCCG---------GUCguGCuuCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 27449 | 0.66 | 0.33813 |
Target: 5'- cCACCaCGG-CGGcCCAGCGCaucAGCCu- -3' miRNA: 3'- -GUGG-GCCuGCC-GGUCGUGcu-UCGGua -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 5950 | 0.66 | 0.314176 |
Target: 5'- gGCCUGGACGGggcggaCCAGguCcAGGCCGg -3' miRNA: 3'- gUGGGCCUGCC------GGUCguGcUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 17161 | 0.66 | 0.33813 |
Target: 5'- uCGCCUGGGCguccagGGCCGGCuucaggGCGGucagGGCCGc -3' miRNA: 3'- -GUGGGCCUG------CCGGUCG------UGCU----UCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 32772 | 0.66 | 0.298933 |
Target: 5'- gAUCCaGGCGGCCGaaacggauuuGC-CGAAGCCGg -3' miRNA: 3'- gUGGGcCUGCCGGU----------CGuGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 28726 | 0.66 | 0.33 |
Target: 5'- aCACCCGGcACGcGCCGG-GCGAcuuucuuGCCGa -3' miRNA: 3'- -GUGGGCC-UGC-CGGUCgUGCUu------CGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 24593 | 0.67 | 0.266062 |
Target: 5'- gGCCUGGAacugggucaccaggcCGGCCAGCACcuggcgcGCCAc -3' miRNA: 3'- gUGGGCCU---------------GCCGGUCGUGcuu----CGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 32612 | 0.67 | 0.270178 |
Target: 5'- ---gCGGGCGGCC-GCugGcGGCCAg -3' miRNA: 3'- guggGCCUGCCGGuCGugCuUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 14860 | 0.67 | 0.270178 |
Target: 5'- gACCCGGcgauccagcuCGGCCuGgGCGAGGUCGc -3' miRNA: 3'- gUGGGCCu---------GCCGGuCgUGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 18690 | 0.67 | 0.250105 |
Target: 5'- -uCCCGGuccucagaaACGGCCAGCuc-AAGCCAa -3' miRNA: 3'- guGGGCC---------UGCCGGUCGugcUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 9173 | 0.67 | 0.250105 |
Target: 5'- -cCCUGGACcuGGCCGccaccCGCGAAGCCGa -3' miRNA: 3'- guGGGCCUG--CCGGUc----GUGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 21342 | 0.67 | 0.263347 |
Target: 5'- uGCCCGcuGCGGCaUGGC-CGAGGCCGg -3' miRNA: 3'- gUGGGCc-UGCCG-GUCGuGCUUCGGUa -5' |
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23107 | 5' | -60.6 | NC_005178.1 | + | 33808 | 0.67 | 0.277152 |
Target: 5'- gGCCCGG-CGcGUCAGCuuGAagguGGCCAg -3' miRNA: 3'- gUGGGCCuGC-CGGUCGugCU----UCGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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