miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23107 5' -60.6 NC_005178.1 + 24895 0.68 0.243693
Target:  5'- cCACCCGccaGCGcGCCGGC-CGccGAGCCGUa -3'
miRNA:   3'- -GUGGGCc--UGC-CGGUCGuGC--UUCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 24593 0.67 0.266062
Target:  5'- gGCCUGGAacugggucaccaggcCGGCCAGCACcuggcgcGCCAc -3'
miRNA:   3'- gUGGGCCU---------------GCCGGUCGUGcuu----CGGUa -5'
23107 5' -60.6 NC_005178.1 + 21342 0.67 0.263347
Target:  5'- uGCCCGcuGCGGCaUGGC-CGAGGCCGg -3'
miRNA:   3'- gUGGGCc-UGCCG-GUCGuGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 14860 0.67 0.270178
Target:  5'- gACCCGGcgauccagcuCGGCCuGgGCGAGGUCGc -3'
miRNA:   3'- gUGGGCCu---------GCCGGuCgUGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 23675 0.66 0.298933
Target:  5'- uCACgCCGGGCGGCgcuggccuuCGGguCGggGUCGa -3'
miRNA:   3'- -GUG-GGCCUGCCG---------GUCguGCuuCGGUa -5'
23107 5' -60.6 NC_005178.1 + 32772 0.66 0.298933
Target:  5'- gAUCCaGGCGGCCGaaacggauuuGC-CGAAGCCGg -3'
miRNA:   3'- gUGGGcCUGCCGGU----------CGuGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 5950 0.66 0.314176
Target:  5'- gGCCUGGACGGggcggaCCAGguCcAGGCCGg -3'
miRNA:   3'- gUGGGCCUGCC------GGUCguGcUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 28726 0.66 0.33
Target:  5'- aCACCCGGcACGcGCCGG-GCGAcuuucuuGCCGa -3'
miRNA:   3'- -GUGGGCC-UGC-CGGUCgUGCUu------CGGUa -5'
23107 5' -60.6 NC_005178.1 + 17161 0.66 0.33813
Target:  5'- uCGCCUGGGCguccagGGCCGGCuucaggGCGGucagGGCCGc -3'
miRNA:   3'- -GUGGGCCUG------CCGGUCG------UGCU----UCGGUa -5'
23107 5' -60.6 NC_005178.1 + 33808 0.67 0.277152
Target:  5'- gGCCCGG-CGcGUCAGCuuGAagguGGCCAg -3'
miRNA:   3'- gUGGGCCuGC-CGGUCGugCU----UCGGUa -5'
23107 5' -60.6 NC_005178.1 + 9173 0.67 0.250105
Target:  5'- -cCCUGGACcuGGCCGccaccCGCGAAGCCGa -3'
miRNA:   3'- guGGGCCUG--CCGGUc----GUGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 6990 0.68 0.213662
Target:  5'- cCACCaaCGGAUcGCCAgGCGCGAggaaGGCCAUg -3'
miRNA:   3'- -GUGG--GCCUGcCGGU-CGUGCU----UCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 24006 0.69 0.20805
Target:  5'- gACCCGccgcauaGGCgAGCugGAAGCCGa -3'
miRNA:   3'- gUGGGCcug----CCGgUCGugCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 34831 0.69 0.197209
Target:  5'- uCGCCCaGGGCGGCguucagCAGCGCGgcGCgGg -3'
miRNA:   3'- -GUGGG-CCUGCCG------GUCGUGCuuCGgUa -5'
23107 5' -60.6 NC_005178.1 + 9924 0.69 0.195626
Target:  5'- gACCCuGGAgGGCCAGCGCauccuguuguugcuGGAGCgCGUc -3'
miRNA:   3'- gUGGG-CCUgCCGGUCGUG--------------CUUCG-GUA- -5'
23107 5' -60.6 NC_005178.1 + 27883 0.69 0.181873
Target:  5'- cCGCCU---CGGCCGGCucgGCGAAGCCAc -3'
miRNA:   3'- -GUGGGccuGCCGGUCG---UGCUUCGGUa -5'
23107 5' -60.6 NC_005178.1 + 34588 0.7 0.177001
Target:  5'- gCGCUCGGGCGGCCGcgaggauCGCG-GGCCAUc -3'
miRNA:   3'- -GUGGGCCUGCCGGUc------GUGCuUCGGUA- -5'
23107 5' -60.6 NC_005178.1 + 26260 0.7 0.177001
Target:  5'- cCACCUGGGCGGacucgaaCAGCuCGggGCgGUu -3'
miRNA:   3'- -GUGGGCCUGCCg------GUCGuGCuuCGgUA- -5'
23107 5' -60.6 NC_005178.1 + 18979 0.71 0.148898
Target:  5'- gCGCCUGGucACGGUCGGCGCGGGuugugaucgagcgcGCCAg -3'
miRNA:   3'- -GUGGGCC--UGCCGGUCGUGCUU--------------CGGUa -5'
23107 5' -60.6 NC_005178.1 + 3625 0.72 0.116758
Target:  5'- -cCCCGGAaaGCCGGCACcAGGCCGc -3'
miRNA:   3'- guGGGCCUgcCGGUCGUGcUUCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.