miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23108 5' -57.6 NC_005178.1 + 15029 0.66 0.477742
Target:  5'- cGGGCCuaucacuGCCugGuGUGggGcguuGAGGCGGUCc -3'
miRNA:   3'- -UCCGG-------CGGugC-UACaaC----CUCCGCUAG- -5'
23108 5' -57.6 NC_005178.1 + 22367 0.66 0.468482
Target:  5'- uAGGCCguugGCCAUGugcgGcUGGAGGCuuUCg -3'
miRNA:   3'- -UCCGG----CGGUGCua--CaACCUCCGcuAG- -5'
23108 5' -57.6 NC_005178.1 + 25149 0.66 0.458304
Target:  5'- aGGGCCGCCagcaagcccGCGAgcu--GAuGGCGGUCa -3'
miRNA:   3'- -UCCGGCGG---------UGCUacaacCU-CCGCUAG- -5'
23108 5' -57.6 NC_005178.1 + 31734 0.66 0.458304
Target:  5'- cGGCCGUUGCGGgucagGUauccggcguuuUGGAGGuCGAUg -3'
miRNA:   3'- uCCGGCGGUGCUa----CA-----------ACCUCC-GCUAg -5'
23108 5' -57.6 NC_005178.1 + 20170 0.67 0.418822
Target:  5'- uAGGCCGaCUGC-AUGUUGGucuGGUaGAUCg -3'
miRNA:   3'- -UCCGGC-GGUGcUACAACCu--CCG-CUAG- -5'
23108 5' -57.6 NC_005178.1 + 16378 0.67 0.399871
Target:  5'- uGGUCGuCCACGAUGU---AGGCGGg- -3'
miRNA:   3'- uCCGGC-GGUGCUACAaccUCCGCUag -5'
23108 5' -57.6 NC_005178.1 + 26971 0.67 0.390603
Target:  5'- aAGGCgCGCCugGAUcgcuaccUGGAGGaCGAg- -3'
miRNA:   3'- -UCCG-GCGGugCUAca-----ACCUCC-GCUag -5'
23108 5' -57.6 NC_005178.1 + 15676 0.67 0.381476
Target:  5'- cGGGCCGaCCAgGAgcacGUUGGGGGaGAc- -3'
miRNA:   3'- -UCCGGC-GGUgCUa---CAACCUCCgCUag -5'
23108 5' -57.6 NC_005178.1 + 26765 0.68 0.372493
Target:  5'- uGGGCUcgGCCAgGAUGgcGGcGGCGuaGUCg -3'
miRNA:   3'- -UCCGG--CGGUgCUACaaCCuCCGC--UAG- -5'
23108 5' -57.6 NC_005178.1 + 14669 0.68 0.372493
Target:  5'- -cGCCGCCGCcAUGgaGGAcgGcGCGAUCa -3'
miRNA:   3'- ucCGGCGGUGcUACaaCCU--C-CGCUAG- -5'
23108 5' -57.6 NC_005178.1 + 5554 0.68 0.363655
Target:  5'- uGGGCgGCUACGuc----GAGGCGAUCc -3'
miRNA:   3'- -UCCGgCGGUGCuacaacCUCCGCUAG- -5'
23108 5' -57.6 NC_005178.1 + 33123 0.68 0.363655
Target:  5'- uGGUgGCUugGGUGgUGGcuGCGGUCg -3'
miRNA:   3'- uCCGgCGGugCUACaACCucCGCUAG- -5'
23108 5' -57.6 NC_005178.1 + 2520 0.68 0.363655
Target:  5'- cGcCCGCCAUGAgacuacUGGAGGCGAc- -3'
miRNA:   3'- uCcGGCGGUGCUaca---ACCUCCGCUag -5'
23108 5' -57.6 NC_005178.1 + 17158 0.68 0.354963
Target:  5'- uGGUCGCCugGgcGUccagGGccggcuucaGGGCGGUCa -3'
miRNA:   3'- uCCGGCGGugCuaCAa---CC---------UCCGCUAG- -5'
23108 5' -57.6 NC_005178.1 + 8857 0.68 0.346418
Target:  5'- cGGCCGCCAucugguCGggGUcuugaacagcaUGGAGGUGGa- -3'
miRNA:   3'- uCCGGCGGU------GCuaCA-----------ACCUCCGCUag -5'
23108 5' -57.6 NC_005178.1 + 15294 0.69 0.313729
Target:  5'- cGGGCCaGCCugGcgGUcGGcuuGGCGGUa -3'
miRNA:   3'- -UCCGG-CGGugCuaCAaCCu--CCGCUAg -5'
23108 5' -57.6 NC_005178.1 + 28264 0.69 0.313729
Target:  5'- uGGCCGCCGCcaauGGUGUcagUGG-GGUGAc- -3'
miRNA:   3'- uCCGGCGGUG----CUACA---ACCuCCGCUag -5'
23108 5' -57.6 NC_005178.1 + 16183 0.71 0.217869
Target:  5'- gGGGCCGCCGCGAaggcguUGUUGaaGAuGGUuuuGAUCg -3'
miRNA:   3'- -UCCGGCGGUGCU------ACAAC--CU-CCG---CUAG- -5'
23108 5' -57.6 NC_005178.1 + 31815 0.74 0.132366
Target:  5'- gAGGCCGCCAcCGAUGc----GGCGAUCu -3'
miRNA:   3'- -UCCGGCGGU-GCUACaaccuCCGCUAG- -5'
23108 5' -57.6 NC_005178.1 + 14154 1.1 0.000283
Target:  5'- cAGGCCGCCACGAUGUUGGAGGCGAUCa -3'
miRNA:   3'- -UCCGGCGGUGCUACAACCUCCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.