miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23110 3' -59.6 NC_005178.1 + 11679 0.69 0.271068
Target:  5'- gUCGA--CGGCCugCGCACCGUCgaaucgCUGAUCg -3'
miRNA:   3'- -AGCUguGCCGG--GCGUGGCAG------GACUGG- -5'
23110 3' -59.6 NC_005178.1 + 35415 0.69 0.264338
Target:  5'- cCGGCGCuGGCCgC-CACCGacagCCUGACg -3'
miRNA:   3'- aGCUGUG-CCGG-GcGUGGCa---GGACUGg -5'
23110 3' -59.6 NC_005178.1 + 20093 0.69 0.264338
Target:  5'- gUCGAauaCACcGCCCGCGCCGcgaagCUGAUCg -3'
miRNA:   3'- -AGCU---GUGcCGGGCGUGGCag---GACUGG- -5'
23110 3' -59.6 NC_005178.1 + 32223 0.69 0.264338
Target:  5'- aUCGACGCcGCCCuGgGCCG-CCUGgucgaGCCg -3'
miRNA:   3'- -AGCUGUGcCGGG-CgUGGCaGGAC-----UGG- -5'
23110 3' -59.6 NC_005178.1 + 10035 0.69 0.255145
Target:  5'- gUCGGCGuCGGCCUucuucuGCGCCuugaccauguuguUCCUGGCCu -3'
miRNA:   3'- -AGCUGU-GCCGGG------CGUGGc------------AGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 24911 0.69 0.251287
Target:  5'- aUGACugGGUCCGUucgcuCCGUCCaagcGACg -3'
miRNA:   3'- aGCUGugCCGGGCGu----GGCAGGa---CUGg -5'
23110 3' -59.6 NC_005178.1 + 16545 0.7 0.232711
Target:  5'- uUCGACcucaaGGaCCGgGCCGaCCUGGCCg -3'
miRNA:   3'- -AGCUGug---CCgGGCgUGGCaGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 18674 0.7 0.226195
Target:  5'- cCGGCGC-GCCCGUACCucccgGUCCUcagaaacGGCCa -3'
miRNA:   3'- aGCUGUGcCGGGCGUGG-----CAGGA-------CUGG- -5'
23110 3' -59.6 NC_005178.1 + 26178 0.7 0.220979
Target:  5'- aUCGGCGCGGCgguggCCGCugCGggCgUGGCg -3'
miRNA:   3'- -AGCUGUGCCG-----GGCGugGCa-GgACUGg -5'
23110 3' -59.6 NC_005178.1 + 5617 0.7 0.220979
Target:  5'- cUCGGCuCGGCCCaUGCCGaUCCagcgaUGGCCg -3'
miRNA:   3'- -AGCUGuGCCGGGcGUGGC-AGG-----ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 23518 0.7 0.215304
Target:  5'- aCcACGCGGCgCCGCAauggcuUCGUgCUGGCCg -3'
miRNA:   3'- aGcUGUGCCG-GGCGU------GGCAgGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 33417 0.71 0.209755
Target:  5'- -gGAaGCGGCCCuCGCCGUCgUaGACCc -3'
miRNA:   3'- agCUgUGCCGGGcGUGGCAGgA-CUGG- -5'
23110 3' -59.6 NC_005178.1 + 2143 0.71 0.18383
Target:  5'- -gGugGCGGCCaGCGCCGgggCCaguUGGCCc -3'
miRNA:   3'- agCugUGCCGGgCGUGGCa--GG---ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 21011 0.72 0.178997
Target:  5'- cCGugGgCGGCagcaCCGcCACCGgCCUGACCu -3'
miRNA:   3'- aGCugU-GCCG----GGC-GUGGCaGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 18562 0.72 0.160778
Target:  5'- cUCGAuCACaaCCCGCGCCGaCCgUGACCa -3'
miRNA:   3'- -AGCU-GUGccGGGCGUGGCaGG-ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 20230 0.73 0.152308
Target:  5'- gCGACcuCGGCCC-CGCCGUCC-GGCg -3'
miRNA:   3'- aGCUGu-GCCGGGcGUGGCAGGaCUGg -5'
23110 3' -59.6 NC_005178.1 + 28947 0.73 0.152308
Target:  5'- cCGGCACGGCCauCGCCGUgcgCCaggUGACCc -3'
miRNA:   3'- aGCUGUGCCGGgcGUGGCA---GG---ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 5323 0.73 0.152308
Target:  5'- cUCGACcagGCGGCCCaggGCGgCGUCgaUGGCCa -3'
miRNA:   3'- -AGCUG---UGCCGGG---CGUgGCAGg-ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 12763 0.73 0.144246
Target:  5'- gCGACGCccuGCgCCGCGCCuacGUCCUcGACCg -3'
miRNA:   3'- aGCUGUGc--CG-GGCGUGG---CAGGA-CUGG- -5'
23110 3' -59.6 NC_005178.1 + 14089 0.73 0.140363
Target:  5'- -gGGC-CGGCuUCGCGCCGggcgcCCUGGCCg -3'
miRNA:   3'- agCUGuGCCG-GGCGUGGCa----GGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.