miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23110 3' -59.6 NC_005178.1 + 14326 1.11 0.000187
Target:  5'- uUCGACACGGCCCGCACCGUCCUGACCu -3'
miRNA:   3'- -AGCUGUGCCGGGCGUGGCAGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 20863 0.75 0.097941
Target:  5'- -gGGCGauGCCUGCGCCGgCCUGAUCg -3'
miRNA:   3'- agCUGUgcCGGGCGUGGCaGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 10245 0.75 0.106503
Target:  5'- gCGACAUGGCCggaCGCAUCGgCCUG-CCg -3'
miRNA:   3'- aGCUGUGCCGG---GCGUGGCaGGACuGG- -5'
23110 3' -59.6 NC_005178.1 + 31602 0.75 0.10951
Target:  5'- -gGACcUGGUCCGCcCCGUCCaGGCCa -3'
miRNA:   3'- agCUGuGCCGGGCGuGGCAGGaCUGG- -5'
23110 3' -59.6 NC_005178.1 + 23325 0.75 0.10951
Target:  5'- -aGACGCGGCCCuugccgGCGCCcugggggaaGUCCaUGGCCa -3'
miRNA:   3'- agCUGUGCCGGG------CGUGG---------CAGG-ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 29244 0.74 0.129282
Target:  5'- aCGAguCGGCCgGCGCCGgcuucaUCCUG-CCa -3'
miRNA:   3'- aGCUguGCCGGgCGUGGC------AGGACuGG- -5'
23110 3' -59.6 NC_005178.1 + 20073 0.73 0.136576
Target:  5'- aUGGCugGGCCgagUGaCGCUGUCCaUGACCg -3'
miRNA:   3'- aGCUGugCCGG---GC-GUGGCAGG-ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 14089 0.73 0.140363
Target:  5'- -gGGC-CGGCuUCGCGCCGggcgcCCUGGCCg -3'
miRNA:   3'- agCUGuGCCG-GGCGUGGCa----GGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 10945 0.73 0.140363
Target:  5'- cCGGCGCGGCCCGC-C--UCCUGcCCc -3'
miRNA:   3'- aGCUGUGCCGGGCGuGgcAGGACuGG- -5'
23110 3' -59.6 NC_005178.1 + 12763 0.73 0.144246
Target:  5'- gCGACGCccuGCgCCGCGCCuacGUCCUcGACCg -3'
miRNA:   3'- aGCUGUGc--CG-GGCGUGG---CAGGA-CUGG- -5'
23110 3' -59.6 NC_005178.1 + 28947 0.73 0.152308
Target:  5'- cCGGCACGGCCauCGCCGUgcgCCaggUGACCc -3'
miRNA:   3'- aGCUGUGCCGGgcGUGGCA---GG---ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 20230 0.73 0.152308
Target:  5'- gCGACcuCGGCCC-CGCCGUCC-GGCg -3'
miRNA:   3'- aGCUGu-GCCGGGcGUGGCAGGaCUGg -5'
23110 3' -59.6 NC_005178.1 + 5323 0.73 0.152308
Target:  5'- cUCGACcagGCGGCCCaggGCGgCGUCgaUGGCCa -3'
miRNA:   3'- -AGCUG---UGCCGGG---CGUgGCAGg-ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 18562 0.72 0.160778
Target:  5'- cUCGAuCACaaCCCGCGCCGaCCgUGACCa -3'
miRNA:   3'- -AGCU-GUGccGGGCGUGGCaGG-ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 21011 0.72 0.178997
Target:  5'- cCGugGgCGGCagcaCCGcCACCGgCCUGACCu -3'
miRNA:   3'- aGCugU-GCCG----GGC-GUGGCaGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 2143 0.71 0.18383
Target:  5'- -gGugGCGGCCaGCGCCGgggCCaguUGGCCc -3'
miRNA:   3'- agCugUGCCGGgCGUGGCa--GG---ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 33417 0.71 0.209755
Target:  5'- -gGAaGCGGCCCuCGCCGUCgUaGACCc -3'
miRNA:   3'- agCUgUGCCGGGcGUGGCAGgA-CUGG- -5'
23110 3' -59.6 NC_005178.1 + 23518 0.7 0.215304
Target:  5'- aCcACGCGGCgCCGCAauggcuUCGUgCUGGCCg -3'
miRNA:   3'- aGcUGUGCCG-GGCGU------GGCAgGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 5617 0.7 0.220979
Target:  5'- cUCGGCuCGGCCCaUGCCGaUCCagcgaUGGCCg -3'
miRNA:   3'- -AGCUGuGCCGGGcGUGGC-AGG-----ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 26178 0.7 0.220979
Target:  5'- aUCGGCGCGGCgguggCCGCugCGggCgUGGCg -3'
miRNA:   3'- -AGCUGUGCCG-----GGCGugGCa-GgACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.