miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23110 3' -59.6 NC_005178.1 + 2143 0.71 0.18383
Target:  5'- -gGugGCGGCCaGCGCCGgggCCaguUGGCCc -3'
miRNA:   3'- agCugUGCCGGgCGUGGCa--GG---ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 2852 0.68 0.306786
Target:  5'- cUGAUgAUGGCCCGCACCGgCUacaGCCg -3'
miRNA:   3'- aGCUG-UGCCGGGCGUGGCaGGac-UGG- -5'
23110 3' -59.6 NC_005178.1 + 3370 0.67 0.354258
Target:  5'- cCGauGCACGGCCgGC-CCuUCC-GGCCg -3'
miRNA:   3'- aGC--UGUGCCGGgCGuGGcAGGaCUGG- -5'
23110 3' -59.6 NC_005178.1 + 3436 0.67 0.354258
Target:  5'- cCGGgAUGGUCC--ACCGgCCUGGCCg -3'
miRNA:   3'- aGCUgUGCCGGGcgUGGCaGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 3489 0.66 0.415883
Target:  5'- aCGugAC-GCCUGCAUcaagggcggCGUCCcGGCCa -3'
miRNA:   3'- aGCugUGcCGGGCGUG---------GCAGGaCUGG- -5'
23110 3' -59.6 NC_005178.1 + 3716 0.66 0.415883
Target:  5'- cCGACAUGGaCCGCcagGCCaagCUGGCCa -3'
miRNA:   3'- aGCUGUGCCgGGCG---UGGcagGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 3974 0.67 0.354258
Target:  5'- aCGACGaGGCCCG-GCCGcuuUCC-GACCc -3'
miRNA:   3'- aGCUGUgCCGGGCgUGGC---AGGaCUGG- -5'
23110 3' -59.6 NC_005178.1 + 3977 0.69 0.284232
Target:  5'- gCGACcagcacguCGGCUCGaUGCCGUCCUGgagaaaaGCCa -3'
miRNA:   3'- aGCUGu-------GCCGGGC-GUGGCAGGAC-------UGG- -5'
23110 3' -59.6 NC_005178.1 + 5119 0.66 0.433708
Target:  5'- gCGcCACGGCugaacugauacagCCGCACCGg-CUGcCCa -3'
miRNA:   3'- aGCuGUGCCG-------------GGCGUGGCagGACuGG- -5'
23110 3' -59.6 NC_005178.1 + 5323 0.73 0.152308
Target:  5'- cUCGACcagGCGGCCCaggGCGgCGUCgaUGGCCa -3'
miRNA:   3'- -AGCUG---UGCCGGG---CGUgGCAGg-ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 5617 0.7 0.220979
Target:  5'- cUCGGCuCGGCCCaUGCCGaUCCagcgaUGGCCg -3'
miRNA:   3'- -AGCUGuGCCGGGcGUGGC-AGG-----ACUGG- -5'
23110 3' -59.6 NC_005178.1 + 6429 0.66 0.425209
Target:  5'- aUUGACcacggGCGGgCCGUcgguGCCGaUgCUGACCg -3'
miRNA:   3'- -AGCUG-----UGCCgGGCG----UGGC-AgGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 6762 0.68 0.329102
Target:  5'- aUCGGCAucuuccuggcccuCGGCCUGCuGCUGaUCCUGGUCg -3'
miRNA:   3'- -AGCUGU-------------GCCGGGCG-UGGC-AGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 9403 0.69 0.277934
Target:  5'- ---cCACGGCcaagaaCCGCACCGUCCacUGAgCg -3'
miRNA:   3'- agcuGUGCCG------GGCGUGGCAGG--ACUgG- -5'
23110 3' -59.6 NC_005178.1 + 10035 0.69 0.255145
Target:  5'- gUCGGCGuCGGCCUucuucuGCGCCuugaccauguuguUCCUGGCCu -3'
miRNA:   3'- -AGCUGU-GCCGGG------CGUGGc------------AGGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 10245 0.75 0.106503
Target:  5'- gCGACAUGGCCggaCGCAUCGgCCUG-CCg -3'
miRNA:   3'- aGCUGUGCCGG---GCGUGGCaGGACuGG- -5'
23110 3' -59.6 NC_005178.1 + 10653 0.67 0.345997
Target:  5'- cCGGC-CGGCgucuCCGCGCCGacCCUGucucaGCCg -3'
miRNA:   3'- aGCUGuGCCG----GGCGUGGCa-GGAC-----UGG- -5'
23110 3' -59.6 NC_005178.1 + 10902 0.67 0.371193
Target:  5'- cUCGACGaucUGGCUCGC-CCGcucguccauugCCUGGCUa -3'
miRNA:   3'- -AGCUGU---GCCGGGCGuGGCa----------GGACUGG- -5'
23110 3' -59.6 NC_005178.1 + 10945 0.73 0.140363
Target:  5'- cCGGCGCGGCCCGC-C--UCCUGcCCc -3'
miRNA:   3'- aGCUGUGCCGGGCGuGgcAGGACuGG- -5'
23110 3' -59.6 NC_005178.1 + 11208 0.67 0.371193
Target:  5'- cCGcCACGGCCUcauacugaGUGCCGUucgcCCUGGCg -3'
miRNA:   3'- aGCuGUGCCGGG--------CGUGGCA----GGACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.