miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23118 3' -56.7 NC_005178.1 + 14075 0.66 0.571351
Target:  5'- gCCGGccgagcagcgGGcCGGCuucgcgccgGGCGCCCUGGc -3'
miRNA:   3'- gGGCCuaua------CCuGCUG---------UCGCGGGACC- -5'
23118 3' -56.7 NC_005178.1 + 29544 0.66 0.553998
Target:  5'- gCCGGugucagGGucagcccCGGCAGC-CCCUGGa -3'
miRNA:   3'- gGGCCuaua--CCu------GCUGUCGcGGGACC- -5'
23118 3' -56.7 NC_005178.1 + 18328 0.66 0.552918
Target:  5'- gCUGGAgcUGGugGACcgcgagguccaggAGCG-CCUGGc -3'
miRNA:   3'- gGGCCUauACCugCUG-------------UCGCgGGACC- -5'
23118 3' -56.7 NC_005178.1 + 5181 0.66 0.543232
Target:  5'- cCCCGGA-GUGGcuaucgcugACGAUcugcucGCGCaCCUGGu -3'
miRNA:   3'- -GGGCCUaUACC---------UGCUGu-----CGCG-GGACC- -5'
23118 3' -56.7 NC_005178.1 + 17007 0.67 0.532535
Target:  5'- cCCUGGAgcUGGGUGACagcuucaacgGGCGCCCa-- -3'
miRNA:   3'- -GGGCCUauACCUGCUG----------UCGCGGGacc -5'
23118 3' -56.7 NC_005178.1 + 29694 0.67 0.511378
Target:  5'- -aCGGAcgggGGACGGauGCGCCaCUGGa -3'
miRNA:   3'- ggGCCUaua-CCUGCUguCGCGG-GACC- -5'
23118 3' -56.7 NC_005178.1 + 16624 0.67 0.50093
Target:  5'- aCCGGcacgccGAUGACcucGGCGUCCUGGa -3'
miRNA:   3'- gGGCCuauac-CUGCUG---UCGCGGGACC- -5'
23118 3' -56.7 NC_005178.1 + 14923 0.67 0.490577
Target:  5'- uCCUGGugggaggguucaAUcgGGA-GACAgGCGUCCUGGa -3'
miRNA:   3'- -GGGCC------------UAuaCCUgCUGU-CGCGGGACC- -5'
23118 3' -56.7 NC_005178.1 + 17080 0.68 0.474224
Target:  5'- gCUGGGcgGUGGcgGCGGCGaucugcucgacguccGCGUCCUGGg -3'
miRNA:   3'- gGGCCUa-UACC--UGCUGU---------------CGCGGGACC- -5'
23118 3' -56.7 NC_005178.1 + 29397 0.68 0.466151
Target:  5'- aCCUGGucguccccacGGGCGAUcucgauGGCGCCCUcGGg -3'
miRNA:   3'- -GGGCCuaua------CCUGCUG------UCGCGGGA-CC- -5'
23118 3' -56.7 NC_005178.1 + 33235 0.68 0.430738
Target:  5'- gCCGGggAUGGACaGCGGCGCauccauuuCCaGGg -3'
miRNA:   3'- gGGCCuaUACCUGcUGUCGCG--------GGaCC- -5'
23118 3' -56.7 NC_005178.1 + 16365 0.68 0.421184
Target:  5'- aCCaGcgAgucGGGCGGCGGCgccuacGCCCUGGg -3'
miRNA:   3'- gGGcCuaUa--CCUGCUGUCG------CGGGACC- -5'
23118 3' -56.7 NC_005178.1 + 35605 0.69 0.411758
Target:  5'- gCCCGGAagcugGGGCGACGGUgacGCuCCaGGu -3'
miRNA:   3'- -GGGCCUaua--CCUGCUGUCG---CG-GGaCC- -5'
23118 3' -56.7 NC_005178.1 + 2193 0.69 0.411758
Target:  5'- gCCGGGccUGGAgCGuCA-CGCCCUGGc -3'
miRNA:   3'- gGGCCUauACCU-GCuGUcGCGGGACC- -5'
23118 3' -56.7 NC_005178.1 + 4911 0.69 0.393306
Target:  5'- uCCCGGAaAUGGcCGAcCAGauCGCCgaGGa -3'
miRNA:   3'- -GGGCCUaUACCuGCU-GUC--GCGGgaCC- -5'
23118 3' -56.7 NC_005178.1 + 17186 0.69 0.375398
Target:  5'- gCCUGGAUGUgcuccaGGACauccGCGaCGCCCUGGu -3'
miRNA:   3'- -GGGCCUAUA------CCUGc---UGUcGCGGGACC- -5'
23118 3' -56.7 NC_005178.1 + 26071 0.69 0.375398
Target:  5'- -aCGGcc-UGGACGACAuCGCCCgagGGg -3'
miRNA:   3'- ggGCCuauACCUGCUGUcGCGGGa--CC- -5'
23118 3' -56.7 NC_005178.1 + 28670 0.69 0.375398
Target:  5'- gUCUGGAUGUaccGGGCGAUGGaGCCCaGGu -3'
miRNA:   3'- -GGGCCUAUA---CCUGCUGUCgCGGGaCC- -5'
23118 3' -56.7 NC_005178.1 + 9326 0.7 0.341271
Target:  5'- gCCUGGAUA---GCGGCGGCGCCgCUcaGGa -3'
miRNA:   3'- -GGGCCUAUaccUGCUGUCGCGG-GA--CC- -5'
23118 3' -56.7 NC_005178.1 + 20132 0.7 0.341271
Target:  5'- cCCUGGccucGUAUGcGGCGGCauAGCGCCC-GGc -3'
miRNA:   3'- -GGGCC----UAUAC-CUGCUG--UCGCGGGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.