miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23119 3' -55.2 NC_005178.1 + 22047 0.71 0.295608
Target:  5'- gGCCAGACCGGCcagGUGCg--CGGUCUGc -3'
miRNA:   3'- aUGGUCUGGUUG---UACGucaGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 23724 0.67 0.471677
Target:  5'- gACgAGAUCGACGU-CAGUCGcGCCg- -3'
miRNA:   3'- aUGgUCUGGUUGUAcGUCAGC-CGGau -5'
23119 3' -55.2 NC_005178.1 + 25176 0.66 0.560088
Target:  5'- aGCCaAGGCC-GCcgGUAGU-GGCCUGg -3'
miRNA:   3'- aUGG-UCUGGuUGuaCGUCAgCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 25879 0.66 0.526233
Target:  5'- cGCCAGGCCAuGCG-GCAGUugcCGGCg-- -3'
miRNA:   3'- aUGGUCUGGU-UGUaCGUCA---GCCGgau -5'
23119 3' -55.2 NC_005178.1 + 27305 0.67 0.493177
Target:  5'- -uCCAGGCgCAGCA-GCGcGcCGGCCUAc -3'
miRNA:   3'- auGGUCUG-GUUGUaCGU-CaGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 29071 0.67 0.493177
Target:  5'- -cCCAGcuCCAGaggcGUAGUCGGCCUGa -3'
miRNA:   3'- auGGUCu-GGUUgua-CGUCAGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 29461 0.74 0.165304
Target:  5'- gGCCAGAggcCCAGCAgaaagcgaUGguGUCGGCCa- -3'
miRNA:   3'- aUGGUCU---GGUUGU--------ACguCAGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 31692 0.67 0.493177
Target:  5'- gGCCgaGGGCCG--GUGUAG-CGGCCUGg -3'
miRNA:   3'- aUGG--UCUGGUugUACGUCaGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 35562 0.67 0.502999
Target:  5'- gGCCAGGCCGACcaGCugaucgauaccacGGUCGGCa-- -3'
miRNA:   3'- aUGGUCUGGUUGuaCG-------------UCAGCCGgau -5'
23119 3' -55.2 NC_005178.1 + 36008 0.69 0.363008
Target:  5'- cGCCGGACaggcgCGACAUGCGGgCGGCg-- -3'
miRNA:   3'- aUGGUCUG-----GUUGUACGUCaGCCGgau -5'
23119 3' -55.2 NC_005178.1 + 37483 0.66 0.55781
Target:  5'- cACCgaGGACCAGCGcgaaugcaucgaGCAGcUCGGCCg- -3'
miRNA:   3'- aUGG--UCUGGUUGUa-----------CGUC-AGCCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.