miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23119 3' -55.2 NC_005178.1 + 1977 0.68 0.419138
Target:  5'- uUGCC-GACCGugGUaucgauaGCuGGUCGGCCUGg -3'
miRNA:   3'- -AUGGuCUGGUugUA-------CG-UCAGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 2442 0.67 0.48237
Target:  5'- gACCGGccGCCAGCG-GCAGcUCGGCg-- -3'
miRNA:   3'- aUGGUC--UGGUUGUaCGUC-AGCCGgau -5'
23119 3' -55.2 NC_005178.1 + 2517 0.69 0.363008
Target:  5'- cGCCAGagcuGCCGAC--GCGGUCGGUCa- -3'
miRNA:   3'- aUGGUC----UGGUUGuaCGUCAGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 3556 0.66 0.526233
Target:  5'- aACCAcauGAUgcgCGACGagGCGGUCGGCCUu -3'
miRNA:   3'- aUGGU---CUG---GUUGUa-CGUCAGCCGGAu -5'
23119 3' -55.2 NC_005178.1 + 4484 0.67 0.471677
Target:  5'- -cCCGGAUaAACccGCAGUUGGCCa- -3'
miRNA:   3'- auGGUCUGgUUGuaCGUCAGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 5857 0.69 0.39089
Target:  5'- aGCCAGGCCGcuacACcgGCccUCGGCCg- -3'
miRNA:   3'- aUGGUCUGGU----UGuaCGucAGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 6499 0.74 0.165304
Target:  5'- gGCCAGgucaccgccGCCAccgugcGCAUGCGGUUGGCCa- -3'
miRNA:   3'- aUGGUC---------UGGU------UGUACGUCAGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 8765 0.72 0.22557
Target:  5'- gACUuGGCCAGCGUGCGGgcggCGGUCUu -3'
miRNA:   3'- aUGGuCUGGUUGUACGUCa---GCCGGAu -5'
23119 3' -55.2 NC_005178.1 + 9134 0.73 0.190674
Target:  5'- aGCCAGGCCggUAUGCuGUCGcuggucgguguGCCUGg -3'
miRNA:   3'- aUGGUCUGGuuGUACGuCAGC-----------CGGAU- -5'
23119 3' -55.2 NC_005178.1 + 9294 0.69 0.354025
Target:  5'- cACCAuuggcggcGGCCAGCGaggcgGCAG-CGGCCUGg -3'
miRNA:   3'- aUGGU--------CUGGUUGUa----CGUCaGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 11317 0.74 0.180139
Target:  5'- gGCCGGgcucuACCAACuggagccaGCGGUCGGCCUGc -3'
miRNA:   3'- aUGGUC-----UGGUUGua------CGUCAGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 11353 0.68 0.40049
Target:  5'- cGCCAGAgCCAGCGccacgcccGCAG-CGGCCa- -3'
miRNA:   3'- aUGGUCU-GGUUGUa-------CGUCaGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 15290 0.76 0.127187
Target:  5'- cUGgCGGGCCAGCcugGCGGUCGGCUUGg -3'
miRNA:   3'- -AUgGUCUGGUUGua-CGUCAGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 16359 0.71 0.272967
Target:  5'- aGCCAGACCAGCGagucggGCGG-CGGCg-- -3'
miRNA:   3'- aUGGUCUGGUUGUa-----CGUCaGCCGgau -5'
23119 3' -55.2 NC_005178.1 + 16833 0.71 0.295608
Target:  5'- aACCAGGCCGAUA-GCcuGGUCGcGCCg- -3'
miRNA:   3'- aUGGUCUGGUUGUaCG--UCAGC-CGGau -5'
23119 3' -55.2 NC_005178.1 + 17123 0.69 0.363008
Target:  5'- gGCCAGGCCGAgGguuucgcGCAGcUUGGCCa- -3'
miRNA:   3'- aUGGUCUGGUUgUa------CGUC-AGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 17379 1.05 0.000931
Target:  5'- cUACCAGACCAACAUGCAGUCGGCCUAc -3'
miRNA:   3'- -AUGGUCUGGUUGUACGUCAGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 20163 0.68 0.410239
Target:  5'- gGCCauguAGGCCGAC-UGCAuGUUGGUCUGg -3'
miRNA:   3'- aUGG----UCUGGUUGuACGU-CAGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 20660 0.67 0.461107
Target:  5'- gGCCAGGgCGcCGaGCAGcUCGGCCUc -3'
miRNA:   3'- aUGGUCUgGUuGUaCGUC-AGCCGGAu -5'
23119 3' -55.2 NC_005178.1 + 21500 0.67 0.493177
Target:  5'- gGCCAGGCCAGCAcGCGGaaCaGCCc- -3'
miRNA:   3'- aUGGUCUGGUUGUaCGUCa-GcCGGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.